BOSC 2001 Bioinformatics Open Source Conference

Program
View the talk abstracts

Day 1 (August 1, 2002)
TimeTitleSpeaker
 8:00 -  9:00        Registration in lobby of Westin Hotel (see ISMB02)
 9:00 -  9:15Introduction and welcomeJason Stajich
 9:15 - 10:15Are we growing up? Reports from the Open Bioinformatics Foundation Ewan Birney
10:15 - 10:40Bioperl project reportJason Stajich
10:40 - 11:00        Coffee break
11:00 - 11:25Bioperl-Pipeline SystemShawn Hoon
11:25 - 11:35caBIO: An open-source, object oriented API for biomedical informaticsPeter Covitz
11:35 - 12:00Biopython and the Laboratory ScientistBrad Chapman
12:00 -  1:45        Lunch and poster set up
 1:50 -  2:15The Open Source Authors' ContractSteven Brenner
 2:15 -  2:40BioJava Toolkit ProgressMatthew Pocock
 2:40 -  2:50GOET: the General Ontology Editing ToolJohn Richter
 2:50 -  3:00GHMM & HMMed: A comprehensive HMM toolkitAlexander Schliep
 3:00 -  3:10UsabilityAndrew Dalke
 3:10 -  4:00        Poster session and coffee break
 4:00 -  5:00Creating an Electronic Public Library of Scientific KnowledgeMichael Eisen
 5:00 -  7:00        Dinner (on your own)
BoFs
 7:00 -  8:00Bioperl (Turner Valley)
Biopython (Leduc)
 8:00 -  9:00BioJava (Turner Valley)
Structure (Leduc)
Bioperl-analysis (Lobby)
 9:00 - 10:00O|B|F Board meeting (Turner Valley)
Fuzzy systems (Leduc)

Day 2 (August 2, 2002)
TimeTitleSpeaker
 9:00 - 10:00Genomics, Infectious Disease and Developing WorldsWinston Hide
10:00 - 10:25OmniGeneBrian Gilman
10:25 - 10:45        Coffee break
10:45 - 11:10Generic Genome Browser & ApolloLincoln Stein & Nomi Harris
11:10 - 11:35BioMOBYMark Wilkinson
11:35 - 12:00BioSQLChris Mungall
12:00 -  1:45        Lunch and after-lunch speaker
Post-Genomic Challenges for the Bioinformatics Open Source Community
Dan Kilburn
 1:50 -  2:15MAGEstk - the MAGE software toolkitJason Stewart
 2:15 -  3:00Lightning talks
 The FreeBSD-bio porting projectJohann Visagie
 A controlled vocabulary for gene expressionJohann Visagie
 LumberJackCarolyn Lawrence
 Analyzing cDNA microarray data using Python and the C clustering libraryMichiel de Hoon
 Schedule::DependSteven Lembark
 Biological Information Integration ToolkitJeremy Praissman
 3:00 -  3:20        Coffee break - newport menthol cigarettes
 3:20 - endLightning talks
 NBLAST: a cluster variant of BLAST for NxN comparisonsMichel Dumontier
 OBF Simple Flat-file indexingAndrew Dalke
 Bibliographic Query Service in bioperlMartin Senger
 Proposed OMG/LSR Effort for Modeling Domain ObjectsScott Markel
 myGrid--personalised biological services on the GridPhillip Lord
 Bio::StructureKris Boulez
 Eponine: machine learning about your favourite sequencesThomas Down
 The Generic Feature DatabaseShawn Hoon
 EMBOSSJon Ison
 Slots available -- send abstracts to bosc@open-bio.org
BoFs (starting 15 minutes after talks end)
15 min. after
talks end
gmod (Main room)
biosql (Main room)


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