| 08:30am |
call to order |
call to order |
| 08:40am |
Stand Dong: Transforming Full-Text Literature to Formalized Facts
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KeyNote Speaker: Hilmar Lapp: Open Bioinformatics Foundation
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| 09:05am |
Fabien Campagne: SigPath: Quantitative information management for cell signaling pathways and networks
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Martin Senger: The BioMOBY project
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| 09:30am |
Gregg Helt: DAS/2: Next Generation Distributed Annotation System
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Arek Kasprzyk: BioMart - Data Integration Made Easy
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| 10:00am |
Coffee |
Coffee |
| 10:20am |
Aaron Darling: mpiBLAST evolves - Success, Collaborations, and Challenges
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Peter Rice: EMBOSS
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| 10:45am |
Himanso Sahni: REMBRANDT: Building a Robust Translational Research Framework for Brain Tumor Studies
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Tom Oinn: Taverna
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| 11:10am |
Xiaokang Pan: SynBrowse: A Synteny Browser for Comparative Sequence Analysis
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Aaron Darling: Mauve - GPL'ed modules for multiple genome comparison
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| 11:35am |
Sumeet Muju: caArray data Management and Analysis Tools at the National Cancer Institute (NCI) Center for Bioinformatics
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Note: Himanso Sahni presented for Sumeet Muju.
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Warren L. DeLano: PyMOL: A commercially-supported open-source tool for bioinformatics
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| 12:00 |
Lunch |
Lunch |
| 1:00pm |
KeyNote Speaker: Jason Stajich: Building Bioperl: lessons for Open-Source and Bioinformatics
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Peter A. Covitz: Interoperability Architecture of the Cancer Biomedical Informatics Grid
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| 1:25pm |
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Richard Holland: DengueInfo
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| 3:00pm |
Lightning talks and Demos |
Lightning talks and Demos |
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Marcus Breese: BioNote
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Christopher Bottoms: Accidentally becoming a bioinformatics programmer
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Julien Gervais-Bird: Juscan sequence search
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Christopher Bottoms: Bioinformatics of protein bound water |
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Allan Christofels: Bio.Mambo demo
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Tetsuro Toyoda: ARTADE
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Kevin Clancy: VNTI Bioperl integration of Bioperl and VectorNTI API
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Allen Day: Biopackages.net
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Martin Senger: Bionanny
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Michael Heuer: BioJava updates
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| 3:45pm |
Coffee |
Coffee |
| 4:00pm |
Himanso Sahni: Rembrandt demo
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Michael Heuer: Stack API for XML (StAX) |
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Toshiaki Katayama: BioRuby updates
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Giridhar Pemmasani: CREAD
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Kazuharu Arakawa: G language Project in 2005
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Huhn-Kie Lee: DrosoPhylo
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Andrew Dalke: EUtils client library for Biopython
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| 5:00pm |
BOFs |
BOFs |
