[Bioperl-l] help with parsing meme output

Stefan Kirov skirov at utk.edu
Thu Jun 23 15:55:53 EDT 2005

$instance->accession_number to get the sequence id
lenght is given by $instance->length

Nandita Mullapudi wrote:

>I am trying to use  Bio::Matrix::PSM::IO to parse meme output.
>I need to extract the values corresponding to length of the
>sequence, seq id, and motif id, start and significance/score.
>I can get the last three using 
>foreach my $instance (@{ $instances }) {
>        my $start = $instance -> start;
>        my $score = $instance -> score;
>But i cannot find out how to get the seq id and seq length.
>any ideas?
>Graduate Student, Kissinger Lab.
>Dept. of Genetics
>UGA, Athens GA 30602 USA
>lab phone: 706-542-6563
>cell phone: 706-254-2444
>Lab add: C318 Life Sciences
>Bioperl-l mailing list
>Bioperl-l at portal.open-bio.org

More information about the Bioperl-l mailing list