[Bioperl-l] perl 5.10 released
cjfields at uiuc.edu
Wed Dec 19 14:19:10 EST 2007
Just updated from CVS and reran tests, Spidey.t is failing now. This
may be from a recent commit:
I'm updating the following page on the wiki for tracking. There are a
few more we should look into at some point:
On Dec 19, 2007, at 11:49 AM, Dave Messina wrote:
>> XML::Parser used to be shipped with a number of perl distros even
>> though it isn't core. We should add a require to these.
>> - RNA_SearchIO fails a few tests.
>> These are very likely from recent commits I made re:GenericHSP and
>> of bits(), raw_score(), etc. (the fails look like missing/switched
>> vals with these method tests). I'll fix these post-svn migration,
>> I don't think these are related to 5.10.
> Agreed -- I doubt this is 5.10-specific.
>> - Bio::Ontology::SimpleGOEngine::GraphAdaptor throws an exception
>>> because Graph::Directed isn't installed.
>> Odd, that should be caught out before tests are run. Needs to be
>> fixed, but one would think this would fail as well under 5.8.
> Yep, and in a minute here I'll test it under 5.8.
>>> - Spidey fails one test.
>> Passes for me. Is it dependency-related?
> I don't think so, but I guess we'll see once I finish installing the
> dependencies. Here's what I got:
> t/Spidey........................ok 1/26 Can't call method
> on an undefined value at t/Spidey.t line 24, <GEN1> line 170.
> # Looks like you planned 26 tests but only ran 3.
> # Looks like your test died just after 3.
> Test returned status 255 (wstat 65280, 0xff00)
> DIED. FAILED tests 4-26
> Failed 23/26 tests, 11.54% okay
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Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign
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