[Bioperl-l] display protein/CDS multiple sequence alignments with exon boundaries

Jay Hannah jay at jays.net
Tue Sep 11 17:15:17 EDT 2007


Lincoln Stein wrote:
> You can view a simple multiple alignment now. Go to www.wormbase.org 
> <http://www.wormbase.org>, turn on some of the EST tracks and then 
> zoom down to base pair level.
>
> In bio::graphics, use the "segments" glyph and turn on the 
> -draw_target option. The features must have DNA attached to them.

Wow.  *http://tinyurl.com/yuz8bq*   I hadn't seen that done before.

> What's coming soon is support for MAF format, which provides 
> genome-level alignments.

I'm looking forward to trying to wrap my head around that.  :)

Jay Hannah
http://clab.ist.unomaha.edu/CLAB/index.php/User:Jhannah



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