[Bioperl-l] Bio::FeatureIO::gff bug?

Chris Fields cjfields at uiuc.edu
Fri Sep 28 19:04:21 EDT 2007


On Sep 28, 2007, at 5:20 PM, Hilmar Lapp wrote:

>
> On Sep 28, 2007, at 5:34 PM, Chris Fields wrote:
>
>> The section writing the gff header info in _initialize() checks the
>> file specifically for '>' prior to output; I think Sendu planned on
>> changing that to use mode() instead.
>
> What if we pass in a file handle?
>
> 	-hilmar

The old way def. wouldn't work with filehandles.  Not sure if  
checking Root::IO::mode() would work as expected in this case, but  
it's certainly worth a try.

chris


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