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Revision as of 23:40, 9 June 2008
Schedule (Day 1)
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Friday, July 18
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9:00-9:15 |
Kam Dahlquist (Chair BOSC 2008) Jason Stajich (President O|B|F) |
[welcome] Open Bioinformatics Foundation Update |
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9:15-10:15 |
Julian Lombardi |
[keynote] Croquet: An Open Collaboration Architecture for Scientific Visualization and Simulation |
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10:15-10:45 |
Coffee Break
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10:45-11:10 |
Hervé Ménager |
[cyberinfrastructure] Mobyle: a New Full Web Bioinformatics Framework |
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11:05-11:30 |
Richard Smith |
[cyberinfrastructure] Intermine – Open Source Data Warehouse and Query Interface |
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11:30-12:05 |
Paul Gordon |
[cyberinfrastructure] Bridging Existing Bioinformatics Tools and Data into Semantic Web Services |
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12:05-12:25 |
Peter Rice |
[cyberinfrastructure] Soaplab2: More Reliable Sesame Door to Bioinformatics Programs |
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12:30-1:30 |
Lunch
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1:30-1:50 |
Barry Sanders & David Arcoleo |
[cyberinfrastructure] BeeSpace: An Interactive System for Functional Analysis |
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1:50-2:10 |
Andrew Jenkinson
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[cyberinfrastructure] BioDas Project Update |
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2:10-2:30 |
Kazuharu Arakawa |
[visualization] E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation |
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2:30-2:50 |
Peter Rice |
[bio*update] EMBOSS: European Molecular Biology Open Software Suite |
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2:50-3:10 |
Michael Heuer
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[bio*update] BioJava Project Update |
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3:10-3:15 |
Justin Wilson |
[lightning talk] Use the Make Utility for the Maintenance of Complex Bioinformatics Pipelines |
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3:15-3:30 |
Additional Lightning Talks/Demos/Birds of a Feather See <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings |
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3:30-4:00 |
Coffee Break
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4:00-5:30 |
Lightning Talks/Demos/BOFs
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Schedule (Day 2)
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Saturday, July 19
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9:00-9:05 |
Kam Dahlquist
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Announcements |
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9:05-9:30 |
Mark Wilkinson |
[workflows] Interoperability with BioMoby – Past, Present, and Future |
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9:30-9:55 |
Joshua Orvis |
[workflows] Ergatis: A Web-based Bioinformatics Pipeline Management and Collaborative Development System |
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9:55-10:15 |
Aleksi Kallio |
[workflows] Chipster – User Friendly DNA Microarray Analysis Software |
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10:15-10:45 |
Coffee Break
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10:45-11:10 |
Jiten Bhagat |
[workflows] myExperiment: Social Software for Sharing Workflows |
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11:10-11:30 |
Todd Smith |
[workflows] BioHDF: Open Binary File Formats for Large Scale Data Management |
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11:30-11:50 |
Aaron Kitzmiller |
[open source software] The Open HeliSphereTM Project: True Open Source from the Inventors of True Single Molecule Sequencing |
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11:50-12:10 |
Ed Lee |
[open source software] Apollo: a Sequence Annotation Editor (with demonstration to follow) |
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12:30-1:30 |
Lunch
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1:30-1:50 |
Hilmar Lapp |
[bio*update] BioSQL Reloaded: 1.0 Release, PhyloDB Module, and Future Features |
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1:50-2:10 |
Syed Haider
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[bio*update] EMBRACE – BioMart Developments and Future |
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2:10-2:30 |
Tiago Antão
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[bio*update] Biopython Project Update |
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2:30-3:30 |
Lightning Talks/Demos/BOFs See <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings |
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3:30-4:00 |
Coffee Break
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4:00-5:30 |
Lightning Talks/Demos/BOFs
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