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Difference between revisions of "Sambamba"
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Sambamba is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM, BAM and CRAM formats. Current parallelised functionality is an important subset of samtools functionality, including view, index, sort, markdup, mpileup and depth. | Sambamba is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM, BAM and CRAM formats. Current parallelised functionality is an important subset of samtools functionality, including view, index, sort, markdup, mpileup and depth. | ||
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https://github.com/lomereiter/sambamba | https://github.com/lomereiter/sambamba | ||
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| + | The Sambamba paper is published in Bioinformatics (2015) doi: [http://dx.doi.org/10.1093/bioinformatics/btv098 10.1093/bioinformatics/btv098]. | ||
| + | Timing logs used in the publication can be found [https://github.com/pjotrp/smb_performance here]. | ||
Latest revision as of 08:47, 24 February 2015
Sambamba is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM, BAM and CRAM formats. Current parallelised functionality is an important subset of samtools functionality, including view, index, sort, markdup, mpileup and depth.
For more information see
https://github.com/lomereiter/sambamba
The Sambamba paper is published in Bioinformatics (2015) doi: 10.1093/bioinformatics/btv098. Timing logs used in the publication can be found here.
