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Difference between revisions of "BOSC 2007 Schedule"

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(Put year in Biopython Update title)
 
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{| border="1" cellspacing="0" cellpadding="10" align="center"
 
{| border="1" cellspacing="0" cellpadding="10" align="center"
 
!  
 
!  
−
! Thursday July 7th
+
! Thursday July 19th
−
! Friday July 8th
+
! Friday July 20th
 
|-  
 
|-  
 
| 8:45am
 
| 8:45am
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|-  
 
|-  
 
| 9:00am
 
| 9:00am
−
| Keynote Speaker: Carole Goble
+
| Keynote Speaker: Carole Goble [http://www.slideshare.net/dullhunk/the-seven-deadly-sins-of-bioinformatics **SLIDES**]
−
| [OS Software] Jan Taubert: The ONDEX Data Integration Framework
+
| [[BOSC_2007_Abstracts#.5BOS_Software.5D_The_ONDEX_Data_Integration_Framework | [OS Software] Jan Taubert: The ONDEX Data Integration Framework]] [http://www.slideshare.net/bosc/the-ondex-data-integration-framework **SLIDES**]
 
|-  
 
|-  
 
| 9:20am
 
| 9:20am
 
|  
 
|  
−
| [OS Software] Subhashree Madhavan: CGEMS: An Open-Source caIntegrator Application to support Whole Genome Association Studies
+
| [[BOSC_2007_Abstracts#.5BOS_Software.5D_CGEMS:_An_Open-Source_caIntegrator_Application_to_support_Whole_Genome_Association_Studies |  [OS Software] Subhashree Madhavan: CGEMS: An Open-Source caIntegrator Application to support Whole Genome Association Studies]]
 
|-  
 
|-  
 
| 9:40am
 
| 9:40am
 
|  
 
|  
−
| [OS Software] Eric Just: Modware: An Object-Oriented Perl Interface to the Chado Schema
+
| [[BOSC_2007_Abstracts#.5BOS_Software.5D_Modware:_An_Object-Oriented_Perl_Interface_to_the_Chado_Schema | [OS Software] Eric Just: Modware: An Object-Oriented Perl Interface to the Chado Schema]] [http://www.slideshare.net/bosc/modware **SLIDES**]
 
|-
 
|-
 
| 10:00
 
| 10:00
−
| [New Technology] James Taylor: The Galaxy Framework for Computational Biology Tool Integration
+
| [[BOSC_2007_Abstracts#.5BNew_Technology.5D_The_Galaxy_Framework_for_Computational_Biology_Tool_Integration | [New Technology] James Taylor: The Galaxy Framework for Computational Biology Tool Integration]] [http://www.slideshare.net/bosc/galaxy **SLIDES**]
−
| [OS Software] Kam Dahlquist: XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources
+
| [[BOSC_2007_Abstracts#.5BOS_Software.5D_XRATE:_Scheme-y_trees.2C_phylo-HMMs_and_phylo-grammars | [OS Software] Ian Holmes: XRATE: Scheme-y trees, phylo-HMMs and phylo-grammars]]
 
|-
 
|-
 
| 10:20
 
| 10:20
−
| [New Technology] Mitch Skinner: AJAX GBrowse: Community Genome Annotation Made Easy
+
| [[BOSC_2007_Abstracts#.5BNew_Technology.5D_AJAX_GBrowse:_Community_Genome_Annotation_Made_Easy | [New Technology] Mitch Skinner: AJAX GBrowse: Community Genome Annotation Made Easy]] [http://genome.biowiki.org/info/BOSC_2007/slides.html **SLIDES**]
−
| [Software Design And Engineering] Kam Dahlquist: An Open Source Framework for Teaching Bioinformatics
+
| [[BOSC_2007_Abstracts#.5BOS_Software.5D_E-Cell_3D:_3-Dimensional_Visualization_Front-End_for_E-Cell_Simulation_Environment | [OS Software] Kazuharu Arakawa: E-Cell 3D: 3-Dimensional Visualization Front-End for E-Cell Simulation Environment]]
 
|-
 
|-
 
| 10:30am
 
| 10:30am
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|-  
 
|-  
 
| 11:00am
 
| 11:00am
−
| [New Technology] Rafael C. Jimenez: Dasty2: A Web Client for Visualizing Protein Sequence Features
+
| [[BOSC_2007_Abstracts#.5BNew_Technology.5D_Dasty2:_A_Web_Client_for_Visualizing_Protein_Sequence_Features | [New Technology] Rafael C. Jimenez: Dasty2: A Web Client for Visualizing Protein Sequence Features]] [http://www.slideshare.net/bosc/dastyt2 **SLIDES**]
−
| [Software Design And Engineering] James Taylor: Tools to Facilitate Large Scale COmparative Genomic Analysis
+
| [[BOSC_2007_Abstracts#.5BOS_Software.5D_XMLPipeDB:_A_Reusable.2C_Open_Source_Tool_Chain_for_Building_Relational_Databases_from_XML_Sources | [OS Software] Kam Dahlquist: XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources]] [http://www.slideshare.net/bosc/xmlpipedb **SLIDES**]
 
|-  
 
|-  
 
| 11:20am
 
| 11:20am
−
| [New Technology] Taavi Hupponen: EMBRACE Web Services
+
| [[BOSC_2007_Abstracts#.5BNew_Technology.5D_EMBRACE_Web_Services | [New Technology] Taavi Hupponen: EMBRACE Web Services]] [http://www.slideshare.net/bosc/embrace-web-services **SLIDES**]
−
| [Lightning Talk] Carol Lushbough: BioStream: An Extensible Database Tool for Biologists
+
| [[BOSC_2007_Abstracts#.5BSoftware_Design_And_Engineering.5D_An_Open_Source_Framework_for_Teaching_Bioinformatics | [Software Design And Engineering] Kam Dahlquist: An Open Source Framework for Teaching Bioinformatics]] [http://www.slideshare.net/bosc/an-open-source-framework-for-teaching-bioinformatics **SLIDES**]
 
|-  
 
|-  
−
| 11:30am
+
| 11:40
 +
| [[BOSC_2007_Abstracts#.5BNew_Technology.5D_CaGrid_Cancer_Biomedical_Informatics_Grid | [New Technology] Krishnakant Shanbhag: CaGrid Cancer Biomedical Informatics Grid]] [http://www.slideshare.net/bosc/cagrid-10-service-infrastructure **SLIDES**]
 +
| [[BOSC_2007_Abstracts#.5BSoftware_Design_And_Engineering.5D_Tools_to_Facilitate_Large_Scale_Comparative_Genomic_Analysis | [Software Design And Engineering] James Taylor: Tools to Facilitate Large Scale Comparative Genomic Analysis]] [http://www.slideshare.net/bosc/software-engineering **SLIDES**]
 +
|-
 +
| 11:50
 +
|  
 
|  
 
|  
−
| [Lightning Talk] Goran Sandberg: Mitrion-C Accellerated NCBI Blast Application
 
−
|-
 
−
| 11:40
 
−
| [New Technology] Krishakant Shanbhag: CaGrid Cancer Biomedical Informatics Grid
 
 
|-
 
|-
−
| Break for Lunch, or Overflow of Talks
 
 
| 12:00
 
| 12:00
 
| Lunch
 
| Lunch
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| 1:30pm
 
| 1:30pm
 
| Martin Senger: BioMoby Project Update
 
| Martin Senger: BioMoby Project Update
−
| Interactive Wifi Workshops
+
| [Lightning Talk] Eric Jain: beta.uniprot.org -- Another Piece of Life Sciences Infrastructure Built on Open Source Software
 
|-
 
|-
 
| 1:45pm
 
| 1:45pm
−
| Peter Cock: BioPython Project Update
+
| Tom Oinn: MyGrid/Taverna Project Update [http://www.slideshare.net/bosc/taverna-2-in-pictures **SLIDES**]
−
| Interactive Wifi Workshops
+
| [Lightning Talk] Toshiaki Katayama -- Introduction of the Japanese Open Bio* community [http://open-bio.jp/archive/20070720_BOSC/BOSC2007-OBJ.pdf **SLIDES**]
 
|-  
 
|-  
 
| 2:00pm
 
| 2:00pm
 
| Richard Holland: BioJava Project Update
 
| Richard Holland: BioJava Project Update
−
| Interactive Wifi Workshops
+
| [Lightning Talk] Kazuharu Arakawa -- G-Language Project
 
|-  
 
|-  
 
| 2:15pm
 
| 2:15pm
−
| Arek Kasprzyk: BioMart Project Update
+
| Arek Kasprzyk: BioMart Project Update [http://www.slideshare.net/bosc/biomart-update **SLIDES**]
−
| Interactive Wifi Workshops
+
| [Lightning Talk] Henrik Abelsson: Mitrion-C Accellerated NCBI Blast Application
 
|-
 
|-
 
| 2:30pm
 
| 2:30pm
−
| Peter Rice: EMBOSS Project Update
+
| Peter Cock: BioPython Project Update 2007 [http://www.slideshare.net/bosc/biopython **SLIDES**]
−
| Interactive Wifi Workshops
+
| [Lightning Talk] Shawn Houston: The Compute Portal Project
 
|-  
 
|-  
 
| 2:45
 
| 2:45
−
| Toshiaki Katayama: BioRuby Project Update
+
| Toshiaki Katayama: BioRuby Project Update [http://bioruby.org/archive/doc/BR070719-bosc.pdf **SLIDES**]
−
| Interactive Wifi Workshops
+
| [[BOSC_2007_Wifi_Workshops | Interactive Wifi Workshops]]
 
|-
 
|-
 
| 3:00pm
 
| 3:00pm
−
| BioPerl Project Update
+
| Jason Stajich: BioPerl Project Update [http://www.slideshare.net/bosc/bioperl-project-update **SLIDES**]
−
| Interactive Wifi Workshops
+
| [[BOSC_2007_Wifi_Workshops | Interactive Wifi Workshops]]
 
|-
 
|-
−
| 3:20pm
+
| 3:15pm
−
| Discuss the Creation of an OBF Distribution CD
+
| Peter Rice: EMBOSS Project Update
−
| Interactive Wifi Workshops
+
| [[BOSC_2007_Wifi_Workshops | Interactive Wifi Workshops]]
 
|-
 
|-
 
| 3:30pm
 
| 3:30pm
 
| Coffee
 
| Coffee
 
| Coffee
 
| Coffee
−
|-  
+
|-
 
| 4:00pm
 
| 4:00pm
−
| Interactive Wifi Workshops
+
| Glenn Proctor: Ensembl Project Update
−
| Interactive Wifi Workshops
+
| [[BOSC_2007_Wifi_Workshops | Interactive Wifi Workshops]]
 +
|-
 +
| 4:15pm
 +
| Discuss the Creation of an [[BOSC/liveCD | OBF Distribution CD]]
 +
| [[BOSC_2007_Wifi_Workshops | Interactive Wifi Workshops]]
 
|-  
 
|-  
 
| 5:00pm
 
| 5:00pm
−
| Interactive Wifi Workshops
+
| [[BOSC_2007_Wifi_Workshops | Interactive Wifi Workshops]]
−
| Interactive Wifi Workshops
+
| [[BOSC_2007_Wifi_Workshops | Interactive Wifi Workshops]]
 
|}
 
|}
 +
<br>
 +
[[BOSC_2007 | Back To BOSC 2007 Home]]

Latest revision as of 20:20, 10 September 2013

  Thursday July 19th Friday July 20th
8:45am Call To Order Call To Order
9:00am Keynote Speaker: Carole Goble **SLIDES** [OS Software] Jan Taubert: The ONDEX Data Integration Framework **SLIDES**
9:20am   [OS Software] Subhashree Madhavan: CGEMS: An Open-Source caIntegrator Application to support Whole Genome Association Studies
9:40am   [OS Software] Eric Just: Modware: An Object-Oriented Perl Interface to the Chado Schema **SLIDES**
10:00 [New Technology] James Taylor: The Galaxy Framework for Computational Biology Tool Integration **SLIDES** [OS Software] Ian Holmes: XRATE: Scheme-y trees, phylo-HMMs and phylo-grammars
10:20 [New Technology] Mitch Skinner: AJAX GBrowse: Community Genome Annotation Made Easy **SLIDES** [OS Software] Kazuharu Arakawa: E-Cell 3D: 3-Dimensional Visualization Front-End for E-Cell Simulation Environment
10:30am Coffee Coffee
11:00am [New Technology] Rafael C. Jimenez: Dasty2: A Web Client for Visualizing Protein Sequence Features **SLIDES** [OS Software] Kam Dahlquist: XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources **SLIDES**
11:20am [New Technology] Taavi Hupponen: EMBRACE Web Services **SLIDES** [Software Design And Engineering] Kam Dahlquist: An Open Source Framework for Teaching Bioinformatics **SLIDES**
11:40 [New Technology] Krishnakant Shanbhag: CaGrid Cancer Biomedical Informatics Grid **SLIDES** [Software Design And Engineering] James Taylor: Tools to Facilitate Large Scale Comparative Genomic Analysis **SLIDES**
11:50    
12:00 Lunch Lunch
1:30pm Martin Senger: BioMoby Project Update [Lightning Talk] Eric Jain: beta.uniprot.org -- Another Piece of Life Sciences Infrastructure Built on Open Source Software
1:45pm Tom Oinn: MyGrid/Taverna Project Update **SLIDES** [Lightning Talk] Toshiaki Katayama -- Introduction of the Japanese Open Bio* community **SLIDES**
2:00pm Richard Holland: BioJava Project Update [Lightning Talk] Kazuharu Arakawa -- G-Language Project
2:15pm Arek Kasprzyk: BioMart Project Update **SLIDES** [Lightning Talk] Henrik Abelsson: Mitrion-C Accellerated NCBI Blast Application
2:30pm Peter Cock: BioPython Project Update 2007 **SLIDES** [Lightning Talk] Shawn Houston: The Compute Portal Project
2:45 Toshiaki Katayama: BioRuby Project Update **SLIDES** Interactive Wifi Workshops
3:00pm Jason Stajich: BioPerl Project Update **SLIDES** Interactive Wifi Workshops
3:15pm Peter Rice: EMBOSS Project Update Interactive Wifi Workshops
3:30pm Coffee Coffee
4:00pm Glenn Proctor: Ensembl Project Update Interactive Wifi Workshops
4:15pm Discuss the Creation of an OBF Distribution CD Interactive Wifi Workshops
5:00pm Interactive Wifi Workshops Interactive Wifi Workshops


Back To BOSC 2007 Home

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