Difference between revisions of "BOSC 2008 schedule"

Friday, July 18

9:00-9:15

Kam Dahlquist (Chair BOSC 2008)

Jason Stajich (President O|B|F)

[welcome] Open Bioinformatics Foundation Update

9:15-10:15

Julian Lombardi

[keynote] Croquet: An Open Collaboration Architecture for Scientific Visualization and Simulation

10:15-10:45

Coffee Break

10:45-11:10

Hervé Ménager

[cyberinfrastructure] Mobyle: a New Full Web Bioinformatics Framework Abstract

11:10-11:35

Richard Smith

[cyberinfrastructure] Intermine – Open Source Data Warehouse and Query Interface Abstract

11:35-12:00

Paul Gordon

[cyberinfrastructure] Bridging Existing Bioinformatics Tools and Data into Semantic Web Services Abstract

12:00-12:25

Peter Rice

[cyberinfrastructure] Soaplab2: More Reliable Sesame Door to Bioinformatics Programs Abstract

12:30-1:30

Lunch

1:30-1:50

Barry Sanders & David Arcoleo

[cyberinfrastructure] BeeSpace: An Interactive System for Functional Analysis Abstract

1:50-2:10

Andrew Jenkinson

[cyberinfrastructure] BioDas Project Update Abstract **SLIDES**

2:10-2:30

Kazuharu Arakawa

[visualization] E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation Abstract

2:30-2:50

Peter Rice

[bio*update] EMBOSS: European Molecular Biology Open Software Suite Abstract

2:50-3:10

Michael Heuer

[bio*update] BioJava Project Update Abstract **SLIDES**

3:10-3:18

Justin Wilson

[lightning talk] Use the Make Utility for the Maintenance of Complex Bioinformatics Pipelines Abstract

3:20-3:28

Brian O'Connor

[lightning talk] SolexaTools: An Open Source Sequence Analysis Framework Abstract

3:30-4:00

Coffee Break

4:00-5:30

Additional Lightning Talks/Demos/BOFs

Saturday, July 19

9:00-9:05

Kam Dahlquist

Announcements

9:05-9:30

Mark Wilkinson

[workflows] Interoperability with BioMoby – Past, Present, and Future Abstract

9:30-9:55

Joshua Orvis

[workflows] Ergatis: A Web-based Bioinformatics Pipeline Management and Collaborative Development System Abstract

9:55-10:15

Aleksi Kallio

[workflows] Chipster – User Friendly DNA Microarray Analysis Software Abstract

10:15-10:45

Coffee Break

10:45-11:10

Jiten Bhagat

[workflows] myExperiment: Social Software for Sharing Workflows Abstract

11:10-11:30

Todd Smith

[workflows] BioHDF: Open Binary File Formats for Large Scale Data Management Abstract

11:30-11:50

Aaron Kitzmiller

[open source software] The Open HeliSphere^TM Project: True Open Source from the Inventors of True Single Molecule Sequencing Abstract

11:50-12:10

Ed Lee

[open source software] Apollo: a Sequence Annotation Editor (with demonstration to follow) Abstract

12:30-1:30

Lunch

1:30-1:50

Hilmar Lapp

[bio*update] BioSQL Reloaded: 1.0 Release, PhyloDB Module, and Future Features Abstract

1:50-2:10

Syed Haider

[bio*update] EMBRACE – BioMart Developments and Future Abstract

2:10-2:30

Tiago Antão

[bio*update] Biopython Project Update Abstract

2:30-2:38

Scott Cain

[lightning talk] GMOD

2:38-2:46

Kannan Vijayan & Dustin Cram

[lightning talk] Fiesta

2:46-2:54

Ben Faga

[lightning talk] CMap: A Comparative Viewer

2:54-3:02

John Green

[lightning talk] ERIC: Enteropathogen Resource Information Center

3:02-3:10

Aaron J. Mackey

[lightning talk] Off the Beaten Track--Buried Treasure and Hidden Jewels in BioPerl

3:10-3:18

Saravanamuttu Gnaneshan

[lightning talk] Web Application Developments with Open Bio in Public health Informatics

3:18-3:26

Pjotr Prins (in absentia)

[lightning talk] BioLib

3:26-3:30

Gregg Helt

[lightning talk] Exploratory Analysis with DAS/2 and the Integrated Genome Browser (IGB)

3:30-4:00

Coffee Break

4:00-5:30

Lightning Talks/Demos/BOFs

[demo] Ergatis - Joshua Orvis

[lightning talk] Genographer - Travis Banks

[BOFs] See BOSC_2008/Birds-of-a-Feather