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Difference between revisions of "Projects"
From Open Bioinformatics Foundation
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* [http://www.gmod.org/ggb Generic Genome Browser] - part of [http://www.gmod.org GMOD] | * [http://www.gmod.org/ggb Generic Genome Browser] - part of [http://www.gmod.org GMOD] | ||
* [http://www.gmod.org/schema/ Chado] - The GMOD DB schema | * [http://www.gmod.org/schema/ Chado] - The GMOD DB schema | ||
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==Other related projects== | ==Other related projects== | ||
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* [http://www.yandell-lab.org/cgl/ CGL] - Comparative Genomics Library | * [http://www.yandell-lab.org/cgl/ CGL] - Comparative Genomics Library | ||
* [http://wikiomics.org Wikiomics] - Bioinformatics wiki | * [http://wikiomics.org Wikiomics] - Bioinformatics wiki | ||
| + | * [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - a tool to generate Web interfaces software for submitting jobs to these interfaces | ||
| + | * [http://www.ebi.ac.uk/~senger/openbqs/ OpenBQS] - Bibliographic query system | ||
| + | * [http://blipkit.org BlipKit] - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics | ||
| + | * [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles | ||
==Ontologies and Definitions== | ==Ontologies and Definitions== | ||
Revision as of 16:52, 9 July 2013
Contents
Main projects
Affiliated projects
- Generic Genome Browser - part of GMOD
- Chado - The GMOD DB schema
- BioHaskell home page, releases
- Biocaml - bioinformatics library in the functional programming language OCaml
- BioPHP
- BioWeka
- BioClipse - visual platform based on Eclipse
- CGL - Comparative Genomics Library
- Wikiomics - Bioinformatics wiki
- Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
- OpenBQS - Bibliographic query system
- BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
- BioMake & Skam - Task management tool, similar to makefiles
Ontologies and Definitions
- Cyclone - provides an open source Java API to the pathway tool BioCyc.
- GO-Perl - parsers and object model for OBO ontologies
- Chaos-XML - File format based on the sequence modules of the Chado relational schema
- Sequence Ontology
- Gene Ontology
- Obol
