| Please visit our ***NEW*** OBF/BOSC website: https://www.open-bio.org/ |
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|'''''Moderator''''': Mónica Muñoz-Torres | |'''''Moderator''''': Mónica Muñoz-Torres | ||
Revision as of 23:45, 30 May 2016
The full program including abstracts will be available soon.
Pre-BOSC: Codefest 2016
See Codefest 2016 for details.
BOSC Day 1 (Friday, July 8, 2016)
| Time | Title | Speaker [Poster] / Chair |
|---|---|---|
| 7:30-9:00 | Registration | |
| 9:00-9:15 | Introduction and Welcome | Nomi Harris and Peter Cock (Co-Chairs, BOSC 2016) |
| 9:15-10:15 | Keynote: The open-source outbreak: can data prevent the next pandemic? | Jennifer Gardy |
| 10:15-10:45 | Coffee Break | |
| 10:45-12:30 | Session: Workflows | Chair: TBA |
| TIME | GenomeSpace: Open source interoperability platform with crowd-sourced analysis recipes | Ted Liefeld |
| TIME | This is Why We Can Have Nice Things: Getting to 1.0 of the Common Workflow Language | Michael R. Crusoe |
| TIME | CWL in Practice: Experiences, challenges, and results from adopting Common Workflow Language | Dan Leehr |
| TIME | Using the Common Workflow Language (CWL) to run portable workflows with Arvados and Toil | Peter Amstutz |
| TIME | Planemo – A Scientific Workflow SDK | John Chilton |
| TIME | Sample Size Does Matter: Scaling Up Analysis in Galaxy with Metagenomics | Daniel Blankenberg |
| TIME | NextflowWorkbench: Reproducible and Reusable Workflows for Beginners and Experts | Fabien Campagne |
| TIME | Promoting platform interoperability with portable bcbio workflows | Brad Chapman |
| 12:30-13:30 | Lunch | |
| 13:00-14:00 | Poster Session and Birds of a Feather sessions (overlapping with lunch) | |
| 14:00-15:30 | Session: Standards and Interoperability | Chair: |
| TIME | Enhancements to MISO: An open-source community-driven LIMS | Andre Masella |
| TIME | Biothings APIs: high-performance bioentity-centric web services | Chunlei Wu |
| TIME | The Noctua Modeling Tool | Seth Carbon |
| TIME | Processing phenotype data using Phenopackets-API and PXFTools | Chris Mungall |
| TIME | The EDAM Ontology | Jon Ison |
| TIME | Towards traceable, scriptable, and efficient data distribution for next-generation genomics | Hilmar Lapp |
| 15:30-16:00 | Coffee Break | |
| 16:00-17:00 | Panel: Growing and sustaining open source communities | Moderator: Mónica Muñoz-Torres
Panelists: John Chilton, Bastian Greshake, Abigail Cabunoc Mayes, Jamie Whitacre, Natasha Wood |
| 17:00-17:10 | Open Bioinformatics Foundation (OBF) Update (or do Sat. morning?) | |
| 17:10-17:15 | Announcements | Nomi Harris |
| 17:15-18:30 | BOFs: Feel free to organize one! | |
| 19:00- | Pay-your-own-way BOSC dinner (TBA) |
BOSC Day 2 (Saturday, July 9, 2016)
| Time | Title | Speaker / Chair |
|---|---|---|
| 9:00-9:05 | Announcements | Peter Cock and Nomi Harris |
| 9:05-9:15 | Codefest 2016 Report | Brad Chapman (Codefest Organizer) |
| 9:15-10:15 | Keynote: Open source, open access, and open data: why science moves faster in an open world | Steven Salzberg |
| 10:15-10:45 | Coffee Break | |
| 10:45-12:30 | Session: Data Science | |
| 10:45-11:02 | ||
| 11:02-11:19 | ||
| 11:19-11:36 | ||
| 11:36-11:53 | ||
| 11:55-12:00 | ||
| 12:00-12:05 | ||
| 12:05-12:10 | ||
| 12:10-12:15 | ||
| 12:15-12:20 | ||
| 12:20-12:25 | ||
| 12:25-12:30 | ||
| 12:30-13:30 | Lunch | |
| 13:00-14:00 | Poster Session and BOFs (overlapping with lunch) | |
| 14:00-14:40 | Session: Developer tools and libraries | Chair: Chris Fields |
| 14:00-14:17 | ||
| 14:17-14:34 | ||
| 14:35-14:40 | ||
| 14:40-15:30 | Session: Open Science and Reproducibility | Chair: |
| 14:40-14:57 | ||
| 14:57-15:14 | ||
| 15:14-15:31 | ||
| 15:30-16:00 | Coffee Break | |
| 16:00-17:00 | Session: Late-Breaking Lightning Talks | |
| 16:00-16:17 | ||
| 16:17-16:22 | ||
| 16:22-16:27 | ||
| 16:30-16:35 | ||
| 16:35-16:40 | ||
| 16:40-16:45 | ||
| 16:45-16:50 | ||
| 16:50-16:55 | ||
| 16:55-17:00 | Concluding remarks | Nomi Harris and Peter Cock |
| 17:00-18:30 | BOFs: Feel free to organize one! | |
| 19:00 | Pay-your-own-way dinner (TBA) |
Posters
If a poster presenter also is giving a talk, the poster link will be above. The table below lists poster-only presentations.
| Poster | Title | Presenter |
|---|---|---|
| P30 |
BOSC 2016 Organizing Committee
Nomi Harris and Peter Cock (Co-Chairs)
Brad Chapman, Chris Fields, Karsten Hokamp, Hilmar Lapp, Mónica Muñoz-Torres, Heather Wiencko
BOSC 2016 Program Committee
Nomi Harris, Michael Heuer, Karen Cranston, Gianluca Della Vedova, George Githinji, Christopher Fields, Hilmar Lapp, Scott Markel, Frank Nothaft, Lorena Pantano, Michael Reich, Morgan Taschuk, Heather Wiencko, Kai Blin, Spencer Bliven, Brad Chapman, Michael Crusoe, Bastian Greshake, Hans-Rudolf Hotz, Herve Menager, Fiona Nielsen, Konstantin Okonechnikov, João Rodrigues, Eric Talevich, Jason Williams, Melissa Wilson Sayres, Peter Cock, Björn Grüning, Karsten Hokamp, Amye Kenall, John Chilton, Konrad Förstner, Jens Lichtenberg, Monica C Munoz-Torres
BOSC is a community effort—we thank all those who made it possible, including the organizing committee, the program committee, the session chairs, our sponsors, and the ISMB SIG chair, Steven Leard.
If you are interested in helping to organize BOSC 2017, please email bosc@open-bio.org
