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Difference between revisions of "BOSC 2017 Posters"

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|8
 
|8
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|Chunlei Wu
 
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|BioThings SDK: a toolkit for building high-performance data APIs in biology
 
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|-
 
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|9
 
 
|Matúš Kalaš
 
|Matúš Kalaš
 
|BioXSD | BioJSON | BioYAML - Towards unified formats for sequences, alignments, features, and annotations"
 
|BioXSD | BioJSON | BioYAML - Towards unified formats for sequences, alignments, features, and annotations"
 
|-
 
|-
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|10
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|9
 
|Felix Shaw
 
|Felix Shaw
 
|Collaborative Open Plant Omics: A platform for "FAIR" data for plant science
 
|Collaborative Open Plant Omics: A platform for "FAIR" data for plant science
 
|-
 
|-
−
|11
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|10
 
|Daria Iakovishina
 
|Daria Iakovishina
 
|CueSea: quality control tool for Illumina genotyping microarray data, with correction on intensity, clusterization and biological specificity."
 
|CueSea: quality control tool for Illumina genotyping microarray data, with correction on intensity, clusterization and biological specificity."
 
|-
 
|-
−
|12
+
|11
 
|Stian Soiland-Reyes
 
|Stian Soiland-Reyes
 
|CWL Viewer: The Common Workflow Language Viewer
 
|CWL Viewer: The Common Workflow Language Viewer
 
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|-
−
|13
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|12
 
|Farah Khan
 
|Farah Khan
 
|CWL+Research Object == Complete Provenance
 
|CWL+Research Object == Complete Provenance
 
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|-
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|14
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|13
 
|Alberto Riva
 
|Alberto Riva
 
|DAMON, an open source framework for reliable and reproducible analysis pipelines"
 
|DAMON, an open source framework for reliable and reproducible analysis pipelines"
 
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|-
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|15
+
|14
 
|Tazro Ohta
 
|Tazro Ohta
 
|Databases to support reanalysis of public high-throughput DNA sequencing data
 
|Databases to support reanalysis of public high-throughput DNA sequencing data
 
|-
 
|-
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|16
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|15
 
|Phillippe Rocca-Serra
 
|Phillippe Rocca-Serra
 
|Discovering datasets with DATS in DataMed
 
|Discovering datasets with DATS in DataMed
 
|-
 
|-
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|17
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|16
 
|Anil S. Thanki
 
|Anil S. Thanki
 
|Discovery and visualisation of homologous genes and gene families using Galaxy
 
|Discovery and visualisation of homologous genes and gene families using Galaxy
 
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|-
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|18
+
|17
 
|Herve Menager
 
|Herve Menager
 
|EDAM - The ontology of bioinformatics operations, types of data, topics, and data formats (2017 update)"
 
|EDAM - The ontology of bioinformatics operations, types of data, topics, and data formats (2017 update)"
 
|-
 
|-
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|19
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|18
 
|Stephen Lincoln
 
|Stephen Lincoln
 
|Emerging public databases of clinical genetic test results: Implications for large scale deployment of precision medicine
 
|Emerging public databases of clinical genetic test results: Implications for large scale deployment of precision medicine
 
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|-
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|20
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|19
 
|Stefan A. POPA
 
|Stefan A. POPA
 
|Enabling the optimization of open-source biological computational tools with scripting languages
 
|Enabling the optimization of open-source biological computational tools with scripting languages
 
|-
 
|-
−
|21
+
|20
 
|Yo Yehudi
 
|Yo Yehudi
 
|Forever in BlueGenes: a next-generation genomic data interface powered by InterMine
 
|Forever in BlueGenes: a next-generation genomic data interface powered by InterMine
 
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|-
−
|22
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|21
 
|Kate Voss
 
|Kate Voss
 
|Full-stack genomics pipelining with GATK4 + WDL + Cromwell
 
|Full-stack genomics pipelining with GATK4 + WDL + Cromwell
 
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|-
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|23
+
|22
 
|Kees van Bochove
 
|Kees van Bochove
 
|Gene Set Variation Analysis in cBioPortal
 
|Gene Set Variation Analysis in cBioPortal
 
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|-
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|24
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|23
 
|Ismail Moghul
 
|Ismail Moghul
 
|GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis for GEO Datasets
 
|GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis for GEO Datasets
 
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|-
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|25
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|24
 
|Silvia Di Giorgio
 
|Silvia Di Giorgio
 
|GRADitude: A computational tool for the analysis of Grad-seq data
 
|GRADitude: A computational tool for the analysis of Grad-seq data
 
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|-
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|26
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|25
 
|Aditya Bharadwaj
 
|Aditya Bharadwaj
 
|GRAPHSPACE: Stimulating interdisciplinary collaborations in network biology
 
|GRAPHSPACE: Stimulating interdisciplinary collaborations in network biology
 
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|-
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|27
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|26
 
|Ted Liefeld
 
|Ted Liefeld
 
|Integrating cloud storage providers for genomic analyses
 
|Integrating cloud storage providers for genomic analyses
 
|-
 
|-
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|28
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|27
 
|Wiktor Jurkowski
 
|Wiktor Jurkowski
 
|Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data
 
|Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data
 
|-
 
|-
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|29
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|28
 
|Nikola Tesic
 
|Nikola Tesic
 
|Microsatellite instability profiling of TCGA colorectal adenocarcinomas using a Common Workflow Language pipeline
 
|Microsatellite instability profiling of TCGA colorectal adenocarcinomas using a Common Workflow Language pipeline
 
|-
 
|-
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|30
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|29
 
|Rickard Hammarén
 
|Rickard Hammarén
 
|NGI-RNAseq - a best practice analysis pipeline in Nextflow
 
|NGI-RNAseq - a best practice analysis pipeline in Nextflow
 
|-
 
|-
−
|31
+
|30
 
|Alexander S Rose
 
|Alexander S Rose
 
|NGL - a molecular graphics library for the web
 
|NGL - a molecular graphics library for the web
 
|-
 
|-
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|32
+
|31
 
|Luis Pedro Coelho
 
|Luis Pedro Coelho
 
|NGLESS: Perfectly understandable and reproducible metagenomics pipelines using a domain-specific language
 
|NGLESS: Perfectly understandable and reproducible metagenomics pipelines using a domain-specific language
 
|-
 
|-
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|33
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|32
 
|Madeleine Ball
 
|Madeleine Ball
 
|Open Humans: Opening human health data
 
|Open Humans: Opening human health data
 
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|-
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|34
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|33
 
|Ngoc-Vinh Tran
 
|Ngoc-Vinh Tran
 
|PhyloProfile: an interactive and dynamic visualization tool for multi-layered phylogenetic profiles
 
|PhyloProfile: an interactive and dynamic visualization tool for multi-layered phylogenetic profiles
 
|-
 
|-
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|35
+
|34
 
|Rabie Saidi
 
|Rabie Saidi
 
|Protein Inpainter: a Message-Passing-based Predictor using Spark GraphX
 
|Protein Inpainter: a Message-Passing-based Predictor using Spark GraphX
 
|-
 
|-
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|36
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|35
 
|Nivethika Mahasivam
 
|Nivethika Mahasivam
 
|RADAR-CNS - Research Infrastructure for processing wearable data to improve health
 
|RADAR-CNS - Research Infrastructure for processing wearable data to improve health
 
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|-
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|37
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|36
 
|Ricardo Wurmus
 
|Ricardo Wurmus
 
|Reproducible and user-controlled software management in HPC with GNU Guix
 
|Reproducible and user-controlled software management in HPC with GNU Guix
 
|-
 
|-
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|38
+
|37
 
|Evanthia Kaimaklioti
 
|Evanthia Kaimaklioti
 
|Reproducing computational experiments in situ as an interactive figure in a journal article.
 
|Reproducing computational experiments in situ as an interactive figure in a journal article.
 
|-
 
|-
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|39
+
|38
 
|Keiichiro Ono
 
|Keiichiro Ono
 
|Revitalizing a classic bioinformatics tool using modern technologies: the case of the Cytoscape Project
 
|Revitalizing a classic bioinformatics tool using modern technologies: the case of the Cytoscape Project
 
|-
 
|-
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|40
+
|39
 
|Kieran O'Neill
 
|Kieran O'Neill
 
|Screw: tools for building reproducible single-cell epigenomics workflows
 
|Screw: tools for building reproducible single-cell epigenomics workflows
 
|-
 
|-
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|41
+
|40
 
|thomas cokelaer
 
|thomas cokelaer
 
|Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis
 
|Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis
 
|-
 
|-
−
|42
+
|41
 
|Denis Yuen
 
|Denis Yuen
 
|The GA4GH Tool Registry Service (TRS) and Dockstore - Year One
 
|The GA4GH Tool Registry Service (TRS) and Dockstore - Year One
 
|-
 
|-
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|43
+
|42
 
|Olga Vrousgou
 
|Olga Vrousgou
 
|The SPOT ontology toolkit : semantics as a service
 
|The SPOT ontology toolkit : semantics as a service
 
|-
 
|-
−
|44
+
|43
 
|Kenzo-Hugo Hillion
 
|Kenzo-Hugo Hillion
 
|ToolDog - generating tool descriptors from the ELIXIR tool registry
 
|ToolDog - generating tool descriptors from the ELIXIR tool registry
 
|-
 
|-
−
|45
+
|44
 
|Uros Sipeitc
 
|Uros Sipeitc
 
|Workflow for processing standard bioinformatics formats with SciClone to infer tumor heterogeneity
 
|Workflow for processing standard bioinformatics formats with SciClone to infer tumor heterogeneity
 
|-
 
|-
−
|46
+
|45
 
|Steffen Möller
 
|Steffen Möller
 
|Workflow-ready bioinformatics packages for Debian-based distributions and this Linux distribution's infrastructure for low-friction reproducible research
 
|Workflow-ready bioinformatics packages for Debian-based distributions and this Linux distribution's infrastructure for low-friction reproducible research
 
|-
 
|-
−
|47
+
|46
 
|Kevin Sayers
 
|Kevin Sayers
 
|Workflows interoperability with Nextflow and Common WL
 
|Workflows interoperability with Nextflow and Common WL
 
|-
 
|-

Revision as of 06:04, 19 June 2017

All BOSC posters will be displayed for the two days of BOSC (July 22-23). ISMB requests that the presenters of even-numbered posters stand by their posters the first day, and odd-numbered poster presenters stand by their posters on the second day. Your poster must be no more than 0.95 m wide x 1.30 m high.

Poster abstracts can be found in the complete program (available soon).

Poster # Title Presenter
1 Monther Alhamdoosh An ensemble approach for gene set testing analysis with reporting capabilities
2 Wei Wang Aztec: Automated Biomedical Tool Index with Improved Information Retrieval System
3 Rishi Nag Bio::DB::HTS - accessing HTSlib from Perl
4 John Fonner BioContainers for supercomputers: 2,000+ accessible, discoverable Singularity apps"
5 Carole Goble Bioschemas for life science data
6 Jiwen Xin BioThings Explorer: Utilizing JSON-LD for Linking Biological APIs to Facilitate Knowledge Discovery
7 Chunlei Wu BioThings SDK: a toolkit for building high-performance data APIs in biology
8 Matúš Kalaš BioJSON | BioYAML - Towards unified formats for sequences, alignments, features, and annotations"
9 Felix Shaw Collaborative Open Plant Omics: A platform for "FAIR" data for plant science
10 Daria Iakovishina CueSea: quality control tool for Illumina genotyping microarray data, with correction on intensity, clusterization and biological specificity."
11 Stian Soiland-Reyes CWL Viewer: The Common Workflow Language Viewer
12 Farah Khan CWL+Research Object == Complete Provenance
13 Alberto Riva DAMON, an open source framework for reliable and reproducible analysis pipelines"
14 Tazro Ohta Databases to support reanalysis of public high-throughput DNA sequencing data
15 Phillippe Rocca-Serra Discovering datasets with DATS in DataMed
16 Anil S. Thanki Discovery and visualisation of homologous genes and gene families using Galaxy
17 Herve Menager EDAM - The ontology of bioinformatics operations, types of data, topics, and data formats (2017 update)"
18 Stephen Lincoln Emerging public databases of clinical genetic test results: Implications for large scale deployment of precision medicine
19 Stefan A. POPA Enabling the optimization of open-source biological computational tools with scripting languages
20 Yo Yehudi Forever in BlueGenes: a next-generation genomic data interface powered by InterMine
21 Kate Voss Full-stack genomics pipelining with GATK4 + WDL + Cromwell
22 Kees van Bochove Gene Set Variation Analysis in cBioPortal
23 Ismail Moghul GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis for GEO Datasets
24 Silvia Di Giorgio GRADitude: A computational tool for the analysis of Grad-seq data
25 Aditya Bharadwaj GRAPHSPACE: Stimulating interdisciplinary collaborations in network biology
26 Ted Liefeld Integrating cloud storage providers for genomic analyses
27 Wiktor Jurkowski Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data
28 Nikola Tesic Microsatellite instability profiling of TCGA colorectal adenocarcinomas using a Common Workflow Language pipeline
29 Rickard Hammarén NGI-RNAseq - a best practice analysis pipeline in Nextflow
30 Alexander S Rose NGL - a molecular graphics library for the web
31 Luis Pedro Coelho NGLESS: Perfectly understandable and reproducible metagenomics pipelines using a domain-specific language
32 Madeleine Ball Open Humans: Opening human health data
33 Ngoc-Vinh Tran PhyloProfile: an interactive and dynamic visualization tool for multi-layered phylogenetic profiles
34 Rabie Saidi Protein Inpainter: a Message-Passing-based Predictor using Spark GraphX
35 Nivethika Mahasivam RADAR-CNS - Research Infrastructure for processing wearable data to improve health
36 Ricardo Wurmus Reproducible and user-controlled software management in HPC with GNU Guix
37 Evanthia Kaimaklioti Reproducing computational experiments in situ as an interactive figure in a journal article.
38 Keiichiro Ono Revitalizing a classic bioinformatics tool using modern technologies: the case of the Cytoscape Project
39 Kieran O'Neill Screw: tools for building reproducible single-cell epigenomics workflows
40 thomas cokelaer Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis
41 Denis Yuen The GA4GH Tool Registry Service (TRS) and Dockstore - Year One
42 Olga Vrousgou The SPOT ontology toolkit : semantics as a service
43 Kenzo-Hugo Hillion ToolDog - generating tool descriptors from the ELIXIR tool registry
44 Uros Sipeitc Workflow for processing standard bioinformatics formats with SciClone to infer tumor heterogeneity
45 Steffen Möller Workflow-ready bioinformatics packages for Debian-based distributions and this Linux distribution's infrastructure for low-friction reproducible research
46 Kevin Sayers Workflows interoperability with Nextflow and Common WL
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