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Difference between revisions of "Projects"
From Open Bioinformatics Foundation
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* [http://biophp.org BioPHP] | * [http://biophp.org BioPHP] | ||
* [http://biosmalltalk.github.io/web/ BioSmalltalk] - Bioinformatics in a pure objects environment | * [http://biosmalltalk.github.io/web/ BioSmalltalk] - Bioinformatics in a pure objects environment | ||
| − | + | * [http://www.yandell-lab.org/software/cgl.html CGL] - Comparative Genomics Library | |
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| − | * [http://www.yandell-lab.org/cgl | ||
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* [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles | * [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles | ||
Revision as of 05:32, 15 November 2018
Contents
Main projects
Affiliated projects
- Generic Genome Browser - part of GMOD
- Chado - The GMOD DB schema
- BioJS - an open-source library of JavaScript components to visualise biological data
- BioHaskell home page, releases
- Biocaml - bioinformatics library in the functional programming language OCaml
- BioPHP
- BioSmalltalk - Bioinformatics in a pure objects environment
- CGL - Comparative Genomics Library
- BioMake & Skam - Task management tool, similar to makefiles
Dead links
- Wikiomics - Bioinformatics wiki
- Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
- OpenBQS - Bibliographic query system
Ontologies and Definitions
- Cyclone - provides an open source Java API to the pathway tool BioCyc.
- GO-Perl - parsers and object model for OBO ontologies
- Chaos-XML - File format based on the sequence modules of the Chado relational schema
- Sequence Ontology
- Gene Ontology
- Obol
