Please visit our ***NEW*** OBF/BOSC website: https://www.open-bio.org/ |
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Difference between revisions of "BOSC 2008 schedule"
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padding:0in 5.4pt 0in 5.4pt'> | padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>11:05-11:30 | + | <p class=MsoNormal><span style='font-size:11.0pt'>11:05-11:30</span></p> |
</td> | </td> | ||
<td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | <td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>Richard Smith | + | <p class=MsoNormal><span style='font-size:11.0pt'>Richard Smith</span></p> |
</td> | </td> | ||
<td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | <td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | ||
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<p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | ||
− | Intermine – Open Source Data Warehouse and Query Interface | + | Intermine – Open Source Data Warehouse and Query Interface</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
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padding:0in 5.4pt 0in 5.4pt'> | padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>11:30-12:05 | + | <p class=MsoNormal><span style='font-size:11.0pt'>11:30-12:05</span></p> |
</td> | </td> | ||
<td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | <td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>Paul Gordon | + | <p class=MsoNormal><span style='font-size:11.0pt'>Paul Gordon</span></p> |
</td> | </td> | ||
<td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | <td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | ||
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<p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] Bridging | <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] Bridging | ||
− | Existing Bioinformatics Tools and Data into Semantic Web Services | + | Existing Bioinformatics Tools and Data into Semantic Web Services</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
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padding:0in 5.4pt 0in 5.4pt'> | padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>12:05-12:25 | + | <p class=MsoNormal><span style='font-size:11.0pt'>12:05-12:25</span></p> |
</td> | </td> | ||
<td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | <td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>Peter Rice | + | <p class=MsoNormal><span style='font-size:11.0pt'>Peter Rice</span></p> |
</td> | </td> | ||
<td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | <td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | ||
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<p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | ||
− | Soaplab2: More Reliable Sesame Door to Bioinformatics Programs | + | Soaplab2: More Reliable Sesame Door to Bioinformatics Programs</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
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<p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span | <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span | ||
− | style='font-size:11.0pt'>12:30-1:30 | + | style='font-size:11.0pt'>12:30-1:30</span></b></p> |
</td> | </td> | ||
<td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none; | <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none; | ||
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<p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span | <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span | ||
− | style='font-size:11.0pt'>Lunch | + | style='font-size:11.0pt'>Lunch</span></b></p> |
<p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span | <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span | ||
− | style='font-size:11.0pt' | + | style='font-size:11.0pt'></span></b></p> |
</td> | </td> | ||
</tr> | </tr> | ||
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padding:0in 5.4pt 0in 5.4pt'> | padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>1:30-1:50 | + | <p class=MsoNormal><span style='font-size:11.0pt'>1:30-1:50</span></p> |
</td> | </td> | ||
<td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | <td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>Barry Sanders & David Arcoleo | + | <p class=MsoNormal><span style='font-size:11.0pt'>Barry Sanders & David Arcoleo</span></p> |
</td> | </td> | ||
<td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | <td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | ||
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<p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | ||
BeeSpace:<span style='mso-spacerun:yes'> </span>An Interactive System for | BeeSpace:<span style='mso-spacerun:yes'> </span>An Interactive System for | ||
− | Functional Analysis | + | Functional Analysis</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
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padding:0in 5.4pt 0in 5.4pt'> | padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>1:50-2:10 | + | <p class=MsoNormal><span style='font-size:11.0pt'>1:50-2:10</span></p> |
</td> | </td> | ||
<td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | <td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>Andrew Jenkinson | + | <p class=MsoNormal><span style='font-size:11.0pt'>Andrew Jenkinson</span></p> |
− | <p class=MsoNormal><span style='font-size:11.0pt' | + | <p class=MsoNormal><span style='font-size:11.0pt'></span></p> |
</td> | </td> | ||
<td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | <td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | ||
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<p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | ||
− | BioDas Project Update | + | BioDas Project Update</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
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padding:0in 5.4pt 0in 5.4pt'> | padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>2:10-2:30 | + | <p class=MsoNormal><span style='font-size:11.0pt'>2:10-2:30</span></p> |
</td> | </td> | ||
<td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | <td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>Kazuharu Arakawa | + | <p class=MsoNormal><span style='font-size:11.0pt'>Kazuharu Arakawa</span></p> |
</td> | </td> | ||
<td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | <td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[visualization] E-Cell 3D: 3-Dimensional | <p class=MsoNormal><span style='font-size:11.0pt'>[visualization] E-Cell 3D: 3-Dimensional | ||
− | Visualization of Dynamic Cell Simulation | + | Visualization of Dynamic Cell Simulation</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
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padding:0in 5.4pt 0in 5.4pt'> | padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>2:30-2:50 | + | <p class=MsoNormal><span style='font-size:11.0pt'>2:30-2:50</span></p> |
</td> | </td> | ||
<td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | <td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>Peter Rice | + | <p class=MsoNormal><span style='font-size:11.0pt'>Peter Rice</span></p> |
</td> | </td> | ||
<td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | <td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | ||
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<p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBOSS: | <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBOSS: | ||
− | European Molecular Biology Open Software Suite | + | European Molecular Biology Open Software Suite</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
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padding:0in 5.4pt 0in 5.4pt'> | padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>2:50-3:10 | + | <p class=MsoNormal><span style='font-size:11.0pt'>2:50-3:10</span></p> |
</td> | </td> | ||
<td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | <td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>Michael Heuer | + | <p class=MsoNormal><span style='font-size:11.0pt'>Michael Heuer</span></p> |
− | <p class=MsoNormal><span style='font-size:11.0pt' | + | <p class=MsoNormal><span style='font-size:11.0pt'></span></p> |
</td> | </td> | ||
<td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | <td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioJava | <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioJava | ||
− | Project Update | + | Project Update</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
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padding:0in 5.4pt 0in 5.4pt'> | padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>3:10-3:15 | + | <p class=MsoNormal><span style='font-size:11.0pt'>3:10-3:15</span></p> |
</td> | </td> | ||
<td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | <td width=136 valign=top style='width:102.0pt;border-top:none;border-left: | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>Justin Wilson | + | <p class=MsoNormal><span style='font-size:11.0pt'>Justin Wilson</span></p> |
</td> | </td> | ||
<td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | <td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Use the | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Use the | ||
− | Make Utility for the Maintenance of Complex Bioinformatics Pipelines | + | Make Utility for the Maintenance of Complex Bioinformatics Pipelines</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
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padding:0in 5.4pt 0in 5.4pt'> | padding:0in 5.4pt 0in 5.4pt'> | ||
− | <p class=MsoNormal><span style='font-size:11.0pt'>3:15-3:30 | + | <p class=MsoNormal><span style='font-size:11.0pt'>3:15-3:30</span></p> |
</td> | </td> | ||
<td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none; | <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none; | ||
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mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>Additional Lightning | <p class=MsoNormal><span style='font-size:11.0pt'>Additional Lightning | ||
− | Talks/Demos/Birds of a Feather | + | Talks/Demos/Birds of a Feather</span></p> |
<p class=MsoNormal><span style='font-size:11.0pt'>See | <p class=MsoNormal><span style='font-size:11.0pt'>See | ||
− | <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings | + | <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
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padding:0in 5.4pt 0in 5.4pt'> | padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span | <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span | ||
− | style='font-size:11.0pt'>3:30-4:00 | + | style='font-size:11.0pt'>3:30-4:00</span></b></p> |
</td> | </td> | ||
<td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none; | <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none; | ||
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<p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span | <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span | ||
− | style='font-size:11.0pt'>Coffee Break | + | style='font-size:11.0pt'>Coffee Break</span></b></p> |
<p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span | <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span | ||
− | style='font-size:11.0pt' | + | style='font-size:11.0pt'></span></b></p> |
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− | Arial' | + | Arial'>Schedule (Day 2)</span></b></p> |
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Revision as of 21:17, 9 June 2008
Schedule (Day 1)
Friday, July18
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9:00-9:15 |
Kam Dahlquist (Chair BOSC 2008) Jason Stajich (President O|B|F) |
[welcome] Open Bioinformatics Foundation Update |
9:15-10:15 |
Julian Lombardi |
[keynote] Croquet: An Open Collaboration Architecture for Scientific Visualization and Simulation |
10:15-10:45 |
Coffee Break
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10:45-11:05 |
Hervé Ménager |
[cyberinfrastructure] Mobyle: a New Full Web Bioinformatics Framework |
11:05-11:30 |
Richard Smith |
[cyberinfrastructure] Intermine – Open Source Data Warehouse and Query Interface |
11:30-12:05 |
Paul Gordon |
[cyberinfrastructure] Bridging Existing Bioinformatics Tools and Data into Semantic Web Services |
12:05-12:25 |
Peter Rice |
[cyberinfrastructure] Soaplab2: More Reliable Sesame Door to Bioinformatics Programs |
12:30-1:30 |
Lunch
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|
1:30-1:50 |
Barry Sanders & David Arcoleo |
[cyberinfrastructure] BeeSpace: An Interactive System for Functional Analysis |
1:50-2:10 |
Andrew Jenkinson
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[cyberinfrastructure] BioDas Project Update |
2:10-2:30 |
Kazuharu Arakawa |
[visualization] E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation |
2:30-2:50 |
Peter Rice |
[bio*update] EMBOSS: European Molecular Biology Open Software Suite |
2:50-3:10 |
Michael Heuer
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[bio*update] BioJava Project Update |
3:10-3:15 |
Justin Wilson |
[lightning talk] Use the Make Utility for the Maintenance of Complex Bioinformatics Pipelines |
3:15-3:30 |
Additional Lightning Talks/Demos/Birds of a Feather See <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings |
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3:30-4:00 |
Coffee Break
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|
4:00-5:30 |
Lightning Talks/Demos/BOFs
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Schedule (Day 2)
<o:p> </o:p>
Saturday, July 19<o:p></o:p> <o:p> </o:p> |
||
9:00-9:05<o:p></o:p> |
Kam Dahlquist<o:p></o:p> <o:p> </o:p> |
Announcements<o:p></o:p> |
9:05-9:30<o:p></o:p> |
Mark Wilkinson<o:p></o:p> |
[workflows] Interoperability with BioMoby – Past, Present, and Future<o:p></o:p> |
9:30-9:55<o:p></o:p> |
Joshua Orvis<o:p></o:p> |
[workflows] Ergatis: A Web-based Bioinformatics Pipeline Management and Collaborative Development System<o:p></o:p> |
9:55-10:15<o:p></o:p> |
Aleksi Kallio<o:p></o:p> |
[workflows] Chipster – User Friendly DNA Microarray Analysis Software<o:p></o:p> |
10:15-10:45<o:p></o:p> |
Coffee Break<o:p></o:p> <o:p> </o:p> |
|
10:45-11:10<o:p></o:p> |
Jiten Bhagat<o:p></o:p> |
[workflows] myExperiment: Social Software for Sharing Workflows<o:p></o:p> |
11:10-11:30<o:p></o:p> |
Todd Smith<o:p></o:p> |
[workflows] BioHDF: Open Binary File Formats for Large Scale Data Management<o:p></o:p> |
11:30-11:50<o:p></o:p> |
Aaron Kitzmiller<o:p></o:p> |
[open source software] The Open HeliSphereTM Project: True Open Source from the Inventors of True Single Molecule Sequencing<o:p></o:p> |
11:50-12:10<o:p></o:p> |
Ed Lee<o:p></o:p> |
[open source software] Apollo: a Sequence Annotation Editor (with demonstration to follow)<o:p></o:p> |
12:30-1:30<o:p></o:p> |
Lunch<o:p></o:p> <o:p> </o:p> |
|
1:30-1:50<o:p></o:p> |
Hilmar Lapp<o:p></o:p> |
[bio*update] BioSQL Reloaded: 1.0 Release, PhyloDB Module, and Future Features<o:p></o:p> |
1:50-2:10<o:p></o:p> |
Syed Haider<o:p></o:p> <o:p> </o:p> |
[bio*update] EMBRACE – BioMart Developments and Future<o:p></o:p> |
2:10-2:30<o:p></o:p> |
Tiago Antão <o:p></o:p> <o:p> </o:p> |
[bio*update] Biopython Project Update<o:p></o:p> |
2:30-3:30<o:p></o:p> |
Lightning Talks/Demos/BOFs<o:p></o:p> See <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings<o:p></o:p> |
|
3:30-4:00<o:p></o:p> |
Coffee Break<o:p></o:p> <o:p> </o:p> |
|
4:00-5:30<o:p></o:p> |
Lightning Talks/Demos/BOFs<o:p></o:p> <o:p> </o:p> |