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Difference between revisions of "Projects"
From Open Bioinformatics Foundation
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==Ontologies and Definitions== | ==Ontologies and Definitions== | ||
| + | * [http://nemo-cyclone.sourceforge.net Cyclone] - provides an open source Java API to the pathway tool BioCyc. | ||
* [http://search.cpan.org/~cmungall/go-perl GO-Perl] - parsers and object model for OBO ontologies | * [http://search.cpan.org/~cmungall/go-perl GO-Perl] - parsers and object model for OBO ontologies | ||
* [http://www.fruitfly.org/chaos-xml/ Chaos-XML] - File format based on the sequence modules of the Chado relational schema | * [http://www.fruitfly.org/chaos-xml/ Chaos-XML] - File format based on the sequence modules of the Chado relational schema | ||
Revision as of 11:57, 28 July 2006
Contents
Main projects
- BioJava
- BioPerl
- BioPipe
- BioPython
- BioRuby
- DAS and their list of Global Sequence Identifiers
- MOBY
- EMBOSS
- OBDA (this website is out of date, a new one is being developed)
Affiliated projects
- Generic Genome Browser - part of GMOD
- Chado - The GMOD DB schema
- Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
- openBQS - Bibliographic query system
- BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
- BioMake & Skam - Task management tool, similar to makefiles
Ontologies and Definitions
- Cyclone - provides an open source Java API to the pathway tool BioCyc.
- GO-Perl - parsers and object model for OBO ontologies
- Chaos-XML - File format based on the sequence modules of the Chado relational schema
- Sequence Ontology
- Gene Ontology
- Obol
