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BOSC 2008 schedule

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Revision as of 21:05, 10 June 2008 by Kdahlquist (talk)
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You may also download the entire BOSC program with the schedule and all abstracts as a PDF file (File:BOSC2008 program.pdf, 1971KB)

Schedule (Day 1)

Friday, July 18

9:00-9:15

Kam Dahlquist (Chair BOSC 2008)

Jason Stajich (President O|B|F)

[welcome] Open Bioinformatics Foundation Update

9:15-10:15

Julian Lombardi

[keynote] Croquet: An Open Collaboration Architecture for Scientific Visualization and Simulation

10:15-10:45

Coffee Break

10:45-11:10

Hervé Ménager

[cyberinfrastructure] Mobyle: a New Full Web Bioinformatics Framework Abstract

11:10-11:35

Richard Smith

[cyberinfrastructure] Intermine – Open Source Data Warehouse and Query Interface

11:35-12:00

Paul Gordon

[cyberinfrastructure] Bridging Existing Bioinformatics Tools and Data into Semantic Web Services

12:00-12:25

Peter Rice

[cyberinfrastructure] Soaplab2: More Reliable Sesame Door to Bioinformatics Programs

12:30-1:30

Lunch

1:30-1:50

Barry Sanders & David Arcoleo

[cyberinfrastructure] BeeSpace:  An Interactive System for Functional Analysis

1:50-2:10

Andrew Jenkinson

[cyberinfrastructure] BioDas Project Update Abstract

2:10-2:30

Kazuharu Arakawa

[visualization] E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation

2:30-2:50

Peter Rice

[bio*update] EMBOSS: European Molecular Biology Open Software Suite Abstract

2:50-3:10

Michael Heuer

[bio*update] BioJava Project Update

3:10-3:15

Justin Wilson

[lightning talk] Use the Make Utility for the Maintenance of Complex Bioinformatics Pipelines Abstract

3:15-3:30

Additional Lightning Talks/Demos/Birds of a Feather

See <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings

3:30-4:00

Coffee Break

4:00-5:30

Lightning Talks/Demos/BOFs


Schedule (Day 2)

Saturday, July 19

9:00-9:05

Kam Dahlquist

Announcements

9:05-9:30

Mark Wilkinson

[workflows] Interoperability with BioMoby – Past, Present, and Future Abstract

9:30-9:55

Joshua Orvis

[workflows] Ergatis: A Web-based Bioinformatics Pipeline Management and Collaborative Development System Abstract

9:55-10:15

Aleksi Kallio

[workflows] Chipster – User Friendly DNA Microarray Analysis Software Abstract

10:15-10:45

Coffee Break

10:45-11:10

Jiten Bhagat

[workflows] myExperiment: Social Software for Sharing Workflows

11:10-11:30

Todd Smith

[workflows] BioHDF: Open Binary File Formats for Large Scale Data Management

11:30-11:50

Aaron Kitzmiller

[open source software] The Open HeliSphereTM Project: True Open Source from the Inventors of True Single Molecule Sequencing Abstract

11:50-12:10

Ed Lee

[open source software] Apollo: a Sequence Annotation Editor (with demonstration to follow)Abstract

12:30-1:30

Lunch

1:30-1:50

Hilmar Lapp

[bio*update] BioSQL Reloaded: 1.0 Release, PhyloDB Module, and Future Features Abstract

1:50-2:10

Syed Haider

[bio*update] EMBRACE – BioMart Developments and Future

2:10-2:30

Tiago Antão

[bio*update] Biopython Project Update

2:30-3:30

Lightning Talks/Demos/BOFs

See <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings

3:30-4:00

Coffee Break

4:00-5:30

Lightning Talks/Demos/BOFs
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