SemWeb:Bio2RDF Endpoints

Here are the current working Sparql Endpoints for Bio2RDF has of July 7th 2010, 17:23 PM

• http://pdb.bio2rdf.org/sparql
• http://geneid-test.bio2rdf.org/sparql
• http://pubmed.bio2rdf.org/sparql
• http://refseq.bio2rdf.org/sparql
• http://omim.bio2rdf.org/sparql
• http://affymetrix.bio2rdf.org/sparql
• http://atlas.bio2rdf.org/sparql
• http://quebec.bio2rdf.org/sparql
• http://bind.bio2rdf.org/sparql
• http://biocarta.bio2rdf.org/sparql
• http://biocyc.bio2rdf.org/sparql
• http://biopax.bio2rdf.org/sparql
• http://chebi.bio2rdf.org/sparql
• http://cpath.bio2rdf.org/sparql
• http://ec.bio2rdf.org/sparql
• http://genbank.bio2rdf.org/sparql
• http://geneid.bio2rdf.org/sparql
• http://go.bio2rdf.org/sparql
• http://hgnc.bio2rdf.org/sparql
• http://homologene.bio2rdf.org/sparql
• http://inoh.bio2rdf.org/sparql
• http://iproclass.bio2rdf.org/sparql
• http://kegg.bio2rdf.org/sparql
• http://mesh.bio2rdf.org/sparql
• http://mgi.bio2rdf.org/sparql
• http://obo.bio2rdf.org/sparql
• http://pid.bio2rdf.org/sparql
• http://protein.bio2rdf.org/sparql
• http://pubchem.bio2rdf.org/sparql
• http://reactome.bio2rdf.org/sparql
• http://registry.bio2rdf.org/sparql
• http://release.bio2rdf.org/sparql
• http://sgd.bio2rdf.org/sparql
• http://taxonomy.bio2rdf.org/sparql
• http://uniparc.bio2rdf.org/sparql
• http://uniprot.bio2rdf.org/sparql
• http://unists.bio2rdf.org/sparql

URI are build with this pattern

http://bio2rdf.org/[namespace]:[identifier]

To get information about this URI, you can either ask directly

http://bio2rdf.org/[namespace]:[identifier]

or ask the corresponding endpoint about it. The corresponding endpoints is located at

http://[namespace].bio2rdf.org/sparql

P.S.: The refseq endpoint is experimental. Instead of using the URI pattern http://bio2rdf.org/refseq:[identifier] it use http://bio2rdf.org/ncbi:[identifier]