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SemWeb:Bio2RDF Endpoints
From Open Bioinformatics Foundation
Here are the current working Sparql Endpoints for Bio2RDF has of July 7th 2010, 17:23 PM
SELECT
WHERE { <http://bio2rdf.org/pdb:1GOF> ?p ?o . optional {?o ?p2 ?o2 .} optional {?o2 ?p3 ?o3 .} }
- http://geneid-test.bio2rdf.org/sparql
- http://pubmed.bio2rdf.org/sparql
- http://refseq.bio2rdf.org/sparql
- http://omim.bio2rdf.org/sparql
- http://affymetrix.bio2rdf.org/sparql
- http://atlas.bio2rdf.org/sparql
- http://quebec.bio2rdf.org/sparql
- http://bind.bio2rdf.org/sparql
- http://biocarta.bio2rdf.org/sparql
- http://biocyc.bio2rdf.org/sparql
- http://biopax.bio2rdf.org/sparql
- http://chebi.bio2rdf.org/sparql
- http://cpath.bio2rdf.org/sparql
- http://ec.bio2rdf.org/sparql
- http://genbank.bio2rdf.org/sparql
- http://geneid.bio2rdf.org/sparql
- http://go.bio2rdf.org/sparql
- http://hgnc.bio2rdf.org/sparql
- http://homologene.bio2rdf.org/sparql
- http://inoh.bio2rdf.org/sparql
- http://iproclass.bio2rdf.org/sparql
- http://kegg.bio2rdf.org/sparql
- http://mesh.bio2rdf.org/sparql
- http://mgi.bio2rdf.org/sparql
- http://obo.bio2rdf.org/sparql
- http://pid.bio2rdf.org/sparql
- http://protein.bio2rdf.org/sparql
- http://pubchem.bio2rdf.org/sparql
- http://reactome.bio2rdf.org/sparql
- http://registry.bio2rdf.org/sparql
- http://release.bio2rdf.org/sparql
- http://sgd.bio2rdf.org/sparql
- http://taxonomy.bio2rdf.org/sparql
- http://uniparc.bio2rdf.org/sparql
- http://uniprot.bio2rdf.org/sparql
- http://unists.bio2rdf.org/sparql
URI are build with this pattern
http://bio2rdf.org/[namespace]:[identifier]
To get information about this URI, you can either ask directly
http://bio2rdf.org/[namespace]:[identifier]
or ask the corresponding endpoint about it. The corresponding endpoints is located at
http://[namespace].bio2rdf.org/sparql
P.S.: The refseq endpoint is experimental. Instead of using the URI pattern http://bio2rdf.org/refseq:[identifier] it use http://bio2rdf.org/ncbi:[identifier]