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Bio-packaging
From Open Bioinformatics Foundation
If you are in any way interested in software packaging and deployment for bioinformatics you can meet like-minded people on the Open Bioinformatics Foundation (OBF) bio-packaging mailing list at
http://lists.open-bio.org/mailman/listinfo/bio-packaging
Here we discuss issues around packaging and deploying software: anything that concerns dependencies, multiple version support and/or reproducibility. The general idea is to come up with solutions we can share across environments and construct (shared) pipelines out of them.
Contents
Generic packaging systems
GNU Guix
GNU guix is a package manager for the Gnu/Linux operating system. Bioinformatics packages are constructed here.
Language based packaging systems
Ruby biogems
- Biogems: http://biogems.info/
Python packages
Perl CPAN
R CRAN
Javascript
- node.js npm: https://www.npmjs.com
- javascript, bower: http://bower.io
