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Difference between revisions of "BOSC 2007 Schedule"

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Line 10: Line 10:
 
| 9:00am
 
| 9:00am
 
| Keynote Speaker: Carole Goble
 
| Keynote Speaker: Carole Goble
| [OS Software] Jan Taubert: The ONDEX Data Integration Framework
+
| [[BOSC_2007_Abstracts#.5BOS_Software.5D_The_ONDEX_Data_Integration_Framework | [OS Software] Jan Taubert: The ONDEX Data Integration Framework]]
 
|-  
 
|-  
 
| 9:20am
 
| 9:20am
 
|  
 
|  
| [OS Software] Subhashree Madhavan: CGEMS: An Open-Source caIntegrator Application to support Whole Genome Association Studies
+
| [[BOSC_2007_Abstracts#.5BOS_Software.5D_CGEMS:_An_Open-Source_caIntegrator_Application_to_support_Whole_Genome_Association_Studies |  [OS Software] Subhashree Madhavan: CGEMS: An Open-Source caIntegrator Application to support Whole Genome Association Studies]]
 
|-  
 
|-  
 
| 9:40am
 
| 9:40am
 
|  
 
|  
| [OS Software] Eric Just: Modware: An Object-Oriented Perl Interface to the Chado Schema
+
| [[BOSC_2007_Abstracts#.5BOS_Software.5D_Modware:_An_Object-Oriented_Perl_Interface_to_the_Chado_Schema | [OS Software] Eric Just: Modware: An Object-Oriented Perl Interface to the Chado Schema]]
 
|-
 
|-
 
| 10:00
 
| 10:00
| [New Technology] James Taylor: The Galaxy Framework for Computational Biology Tool Integration
+
| [[BOSC_2007_Abstracts#.5BNew_Technology.5D_The_Galaxy_Framework_for_Computational_Biology_Tool_Integration | [New Technology] James Taylor: The Galaxy Framework for Computational Biology Tool Integration]]
| [OS Software] Ian Holmes: XRATE: Scheme-y trees, phylo-HMMs and phylo-grammars
+
| [[BOSC_2007_Abstracts#.5BOS_Software.5D_XRATE:_Scheme-y_trees.2C_phylo-HMMs_and_phylo-grammars | [OS Software] Ian Holmes: XRATE: Scheme-y trees, phylo-HMMs and phylo-grammars]]
 
|-
 
|-
 
| 10:20
 
| 10:20
| [New Technology] Mitch Skinner: AJAX GBrowse: Community Genome Annotation Made Easy
+
| [[BOSC_2007_Abstracts#.5BNew_Technology.5D_AJAX_GBrowse:_Community_Genome_Annotation_Made_Easy | [New Technology] Mitch Skinner: AJAX GBrowse: Community Genome Annotation Made Easy]]
| [OS Software] Kam Dahlquist: XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources
+
| [[BOSC_2007_Abstracts#.5BOS_Software.5D_XMLPipeDB:_A_Reusable.2C_Open_Source_Tool_Chain_for_Building_Relational_Databases_from_XML_Sources | [OS Software] Kam Dahlquist: XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources]]
 
|-
 
|-
 
| 10:30am
 
| 10:30am
Line 33: Line 33:
 
|-  
 
|-  
 
| 11:00am
 
| 11:00am
| [New Technology] Rafael C. Jimenez: Dasty2: A Web Client for Visualizing Protein Sequence Features
+
| [[BOSC_2007_Abstracts#.5BNew_Technology.5D_Dasty2:_A_Web_Client_for_Visualizing_Protein_Sequence_Features | [New Technology] Rafael C. Jimenez: Dasty2: A Web Client for Visualizing Protein Sequence Features]]
| [Software Design And Engineering] Kam Dahlquist: An Open Source Framework for Teaching Bioinformatics
+
| [[BOSC_2007_Abstracts#.5BSoftware_Design_And_Engineering.5D_An_Open_Source_Framework_for_Teaching_Bioinformatics | [Software Design And Engineering] Kam Dahlquist: An Open Source Framework for Teaching Bioinformatics]]
 
|-  
 
|-  
 
| 11:20am
 
| 11:20am
| [New Technology] Taavi Hupponen: EMBRACE Web Services
+
| [[BOSC_2007_Abstracts#.5BNew_Technology.5D_EMBRACE_Web_Services | [New Technology] Taavi Hupponen: EMBRACE Web Services]]
| [Software Design And Engineering] James Taylor: Tools to Facilitate Large Scale Comparative Genomic Analysis  
+
| [[BOSC_2007_Abstracts#.5BSoftware_Design_And_Engineering.5D_Tools_to_Facilitate_Large_Scale_Comparative_Genomic_Analysis | [Software Design And Engineering] James Taylor: Tools to Facilitate Large Scale Comparative Genomic Analysis]]
 
|-  
 
|-  
 
| 11:40
 
| 11:40
| [New Technology] Krishnakant Shanbhag: CaGrid Cancer Biomedical Informatics Grid
+
| [[BOSC_2007_Abstracts#.5BNew_Technology.5D_CaGrid_Cancer_Biomedical_Informatics_Grid | [New Technology] Krishnakant Shanbhag: CaGrid Cancer Biomedical Informatics Grid]]
 
| [Lightning Talk] Carol Lushbough: BioStream: An Extensible Database Tool for Biologists
 
| [Lightning Talk] Carol Lushbough: BioStream: An Extensible Database Tool for Biologists
 
|-
 
|-
Line 58: Line 58:
 
| 1:45pm
 
| 1:45pm
 
| Tom Oinn: MyGrid/Taverna Project Update
 
| Tom Oinn: MyGrid/Taverna Project Update
| Interactive Wifi Workshops
+
| [[Wifi_Workshops | Interactive Wifi Workshops]]
 
|-  
 
|-  
 
| 2:00pm
 
| 2:00pm
 
| Richard Holland: BioJava Project Update
 
| Richard Holland: BioJava Project Update
| Interactive Wifi Workshops
+
| [[Wifi_Workshops | Interactive Wifi Workshops]]
 
|-  
 
|-  
 
| 2:15pm
 
| 2:15pm
 
| Arek Kasprzyk: BioMart Project Update
 
| Arek Kasprzyk: BioMart Project Update
| Interactive Wifi Workshops
+
| [[Wifi_Workshops | Interactive Wifi Workshops]]
 
|-
 
|-
 
| 2:30pm
 
| 2:30pm
 
| Peter Cock: BioPython Project Update
 
| Peter Cock: BioPython Project Update
| Interactive Wifi Workshops
+
| [[Wifi_Workshops | Interactive Wifi Workshops]]
 
|-  
 
|-  
 
| 2:45
 
| 2:45
 
| Toshiaki Katayama: BioRuby Project Update
 
| Toshiaki Katayama: BioRuby Project Update
| Interactive Wifi Workshops
+
| [[Wifi_Workshops | Interactive Wifi Workshops]]
 
|-
 
|-
 
| 3:00pm
 
| 3:00pm
 
| BioPerl Project Update
 
| BioPerl Project Update
| Interactive Wifi Workshops
+
| [[Wifi_Workshops | Interactive Wifi Workshops]]
 
|-
 
|-
 
| 3:15pm
 
| 3:15pm
 
| Peter Rice: EMBOSS Project Update
 
| Peter Rice: EMBOSS Project Update
| Interactive Wifi Workshops
+
| [[Wifi_Workshops | Interactive Wifi Workshops]]
 
|-
 
|-
 
| 3:30pm
 
| 3:30pm
Line 90: Line 90:
 
| 4:00pm
 
| 4:00pm
 
| Discuss the Creation of an OBF Distribution CD
 
| Discuss the Creation of an OBF Distribution CD
| Interactive Wifi Workshops
+
| [[Wifi_Workshops | Interactive Wifi Workshops]]
 
|-  
 
|-  
 
| 5:00pm
 
| 5:00pm
| Interactive Wifi Workshops
+
| [[Wifi_Workshops | Interactive Wifi Workshops]]
| Interactive Wifi Workshops
+
| [[Wifi_Workshops | Interactive Wifi Workshops]]
 
|}
 
|}

Revision as of 15:19, 11 June 2007

  Thursday July 19th Friday July 20th
8:45am Call To Order Call To Order
9:00am Keynote Speaker: Carole Goble [OS Software] Jan Taubert: The ONDEX Data Integration Framework
9:20am   [OS Software] Subhashree Madhavan: CGEMS: An Open-Source caIntegrator Application to support Whole Genome Association Studies
9:40am   [OS Software] Eric Just: Modware: An Object-Oriented Perl Interface to the Chado Schema
10:00 [New Technology] James Taylor: The Galaxy Framework for Computational Biology Tool Integration [OS Software] Ian Holmes: XRATE: Scheme-y trees, phylo-HMMs and phylo-grammars
10:20 [New Technology] Mitch Skinner: AJAX GBrowse: Community Genome Annotation Made Easy [OS Software] Kam Dahlquist: XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources
10:30am Coffee Coffee
11:00am [New Technology] Rafael C. Jimenez: Dasty2: A Web Client for Visualizing Protein Sequence Features [Software Design And Engineering] Kam Dahlquist: An Open Source Framework for Teaching Bioinformatics
11:20am [New Technology] Taavi Hupponen: EMBRACE Web Services [Software Design And Engineering] James Taylor: Tools to Facilitate Large Scale Comparative Genomic Analysis
11:40 [New Technology] Krishnakant Shanbhag: CaGrid Cancer Biomedical Informatics Grid [Lightning Talk] Carol Lushbough: BioStream: An Extensible Database Tool for Biologists
11:50   [Lightning Talk] Goran Sandberg: Mitrion-C Accellerated NCBI Blast Application
12:00 Lunch Lunch
1:30pm Martin Senger: BioMoby Project Update [Lightning Talk] Eric Jain: beta.uniprot.org -- Another Piece of Life Sciences Infrastructure Built on Open Source Software
1:45pm Tom Oinn: MyGrid/Taverna Project Update Interactive Wifi Workshops
2:00pm Richard Holland: BioJava Project Update Interactive Wifi Workshops
2:15pm Arek Kasprzyk: BioMart Project Update Interactive Wifi Workshops
2:30pm Peter Cock: BioPython Project Update Interactive Wifi Workshops
2:45 Toshiaki Katayama: BioRuby Project Update Interactive Wifi Workshops
3:00pm BioPerl Project Update Interactive Wifi Workshops
3:15pm Peter Rice: EMBOSS Project Update Interactive Wifi Workshops
3:30pm Coffee Coffee
4:00pm Discuss the Creation of an OBF Distribution CD Interactive Wifi Workshops
5:00pm Interactive Wifi Workshops Interactive Wifi Workshops