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Difference between revisions of "BOSC 2016 Schedule"

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|GenomeSpace: Open source interoperability platform with crowd-sourced analysis recipes
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|Ted Liefeld
 
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|This is Why We Can Have Nice Things: Getting to 1.0 of the Common Workflow Language
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|Michael R. Crusoe
 
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|CWL in Practice: Experiences, challenges, and results from adopting Common Workflow Language
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|Dan Leehr
 
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|Using the Common Workflow Language (CWL) to run portable workflows with Arvados and Toil
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|Planemo – A Scientific Workflow SDK
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|Sample Size Does Matter: Scaling Up Analysis in Galaxy with Metagenomics
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|Daniel Blankenberg
 
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|NextflowWorkbench: Reproducible and Reusable Workflows for Beginners and Experts
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|Fabien Campagne
 
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|Promoting platform interoperability with portable bcbio workflows
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|Brad Chapman
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Revision as of 23:42, 30 May 2016

BOSC logo

The full program including abstracts will be available soon.

Pre-BOSC: Codefest 2016

See Codefest 2016 for details.

BOSC Day 1 (Friday, July 8, 2016)

Time Title Speaker [Poster] / Chair
7:30-9:00 Registration
9:00-9:15 Introduction and Welcome Nomi Harris and Peter Cock (Co-Chairs, BOSC 2016)
9:15-10:15 Keynote: The open-source outbreak: can data prevent the next pandemic? Jennifer Gardy
10:15-10:45 Coffee Break
10:45-12:30 Session: Workflows Chair: TBA
TIME GenomeSpace: Open source interoperability platform with crowd-sourced analysis recipes Ted Liefeld
TIME This is Why We Can Have Nice Things: Getting to 1.0 of the Common Workflow Language Michael R. Crusoe
TIME CWL in Practice: Experiences, challenges, and results from adopting Common Workflow Language Dan Leehr
TIME Using the Common Workflow Language (CWL) to run portable workflows with Arvados and Toil Peter Amstutz
TIME Planemo – A Scientific Workflow SDK John Chilton
TIME Sample Size Does Matter: Scaling Up Analysis in Galaxy with Metagenomics Daniel Blankenberg
TIME NextflowWorkbench: Reproducible and Reusable Workflows for Beginners and Experts Fabien Campagne
TIME Promoting platform interoperability with portable bcbio workflows Brad Chapman
12:30-13:30 Lunch
13:00-14:00 Poster Session and Birds of a Feather sessions (overlapping with lunch)
14:00-15:30 Session: Standards and Interoperability Chair:
14:00-14:17
14:17-14:34
14:34-14:51
14:51-15:08
15:10-15:15
15:15-15:20
15:20-15:25
15:25-15:30
15:30-16:00 Coffee Break
16:00-17:00 Panel: Growing and sustaining open source communities Moderator: Mónica Muñoz-Torres

Panelists: John Chilton, Bastian Greshake, Abigail Cabunoc Mayes, Jamie Whitacre, Natasha Wood

17:00-17:10 Open Bioinformatics Foundation (OBF) Update (or do Sat. morning?)
17:10-17:15 Announcements Nomi Harris
17:15-18:30 BOFs: Feel free to organize one!
19:00- Pay-your-own-way BOSC dinner (TBA)

BOSC Day 2 (Saturday, July 9, 2016)

Time Title Speaker / Chair
9:00-9:05 Announcements Peter Cock and Nomi Harris
9:05-9:15 Codefest 2016 Report Brad Chapman (Codefest Organizer)
9:15-10:15 Keynote: Open source, open access, and open data: why science moves faster in an open world Steven Salzberg
10:15-10:45 Coffee Break
10:45-12:30 Session: Data Science
10:45-11:02
11:02-11:19
11:19-11:36
11:36-11:53
11:55-12:00
12:00-12:05
12:05-12:10
12:10-12:15
12:15-12:20
12:20-12:25
12:25-12:30
12:30-13:30 Lunch
13:00-14:00 Poster Session and BOFs (overlapping with lunch)
14:00-14:40 Session: Developer tools and libraries Chair: Chris Fields
14:00-14:17
14:17-14:34
14:35-14:40
14:40-15:30 Session: Open Science and Reproducibility Chair:
14:40-14:57
14:57-15:14
15:14-15:31
15:30-16:00 Coffee Break
16:00-17:00 Session: Late-Breaking Lightning Talks
16:00-16:17
16:17-16:22
16:22-16:27
16:30-16:35
16:35-16:40
16:40-16:45
16:45-16:50
16:50-16:55
16:55-17:00 Concluding remarks Nomi Harris and Peter Cock
17:00-18:30 BOFs: Feel free to organize one!
19:00 Pay-your-own-way dinner (TBA)

Posters

If a poster presenter also is giving a talk, the poster link will be above. The table below lists poster-only presentations.

Poster Title Presenter
P30

BOSC 2016 Organizing Committee

Nomi Harris and Peter Cock (Co-Chairs)

Brad Chapman, Chris Fields, Karsten Hokamp, Hilmar Lapp, Mónica Muñoz-Torres, Heather Wiencko

BOSC 2016 Program Committee

Nomi Harris, Michael Heuer, Karen Cranston, Gianluca Della Vedova, George Githinji, Christopher Fields, Hilmar Lapp, Scott Markel, Frank Nothaft, Lorena Pantano, Michael Reich, Morgan Taschuk, Heather Wiencko, Kai Blin, Spencer Bliven, Brad Chapman, Michael Crusoe, Bastian Greshake, Hans-Rudolf Hotz, Herve Menager, Fiona Nielsen, Konstantin Okonechnikov, João Rodrigues, Eric Talevich, Jason Williams, Melissa Wilson Sayres, Peter Cock, Björn Grüning, Karsten Hokamp, Amye Kenall, John Chilton, Konrad Förstner, Jens Lichtenberg, Monica C Munoz-Torres

BOSC is a community effort—we thank all those who made it possible, including the organizing committee, the program committee, the session chairs, our sponsors, and the ISMB SIG chair, Steven Leard.

If you are interested in helping to organize BOSC 2017, please email bosc@open-bio.org

Return to BOSC 2016 main page