| Please visit our ***NEW*** OBF/BOSC website: https://www.open-bio.org/ |
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Difference between revisions of "BOSC 2014"
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<div style="float:left; maxwidth: 180px; margin-left:25px; margin-right:15px; background-color: #FFFFFF">[[Image:Pear.png|left|The Bosc Pear]]</div> | <div style="float:left; maxwidth: 180px; margin-left:25px; margin-right:15px; background-color: #FFFFFF">[[Image:Pear.png|left|The Bosc Pear]]</div> | ||
| − | The 15th Annual Bioinformatics Open Source Conference (BOSC 2014) will be held in Boston on July 11-12, right before ISMB 2014. | + | The 15th Annual Bioinformatics Open Source Conference (BOSC 2014) will be held in Boston on July 11-12, right before [https://www.iscb.org/ismb2014 ISMB 2014] as one of the SIG meetings. |
Abstract submission for talks is now closed. However, we will begin accepting poster abstracts in May. | Abstract submission for talks is now closed. However, we will begin accepting poster abstracts in May. | ||
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* May 2, 2014: Talk acceptance notices due to be sent out | * May 2, 2014: Talk acceptance notices due to be sent out | ||
* May 2, 2014: Call for poster abstracts due to open | * May 2, 2014: Call for poster abstracts due to open | ||
| − | * June 6, 2014: Deadline for early registration | + | * June 6, 2014: Deadline for early booking [https://www.iscb.org/ismb2014-registration registration] |
| + | * June 27, 2014: Deadline for normal [https://www.iscb.org/ismb2014-registration registration] | ||
* July 9-10, 2014: [[Codefest 2014]], Boston, MA | * July 9-10, 2014: [[Codefest 2014]], Boston, MA | ||
* July 11-12, 2014: BOSC 2014, Boston, MA | * July 11-12, 2014: BOSC 2014, Boston, MA | ||
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== Overview == | == Overview == | ||
| − | The Bioinformatics Open Source Conference (BOSC) is a two-day | + | The Bioinformatics Open Source Conference (BOSC) is run as a two-day meeting before the annual ISMB conference. It is sponsored by the Open Bioinformatics Foundation (O|B|F), a non-profit group dedicated to promoting the practice and philosophy of Open Source software development within the biological research community. |
Open Source software has flourished in the bioinformatics community for well over a decade. When the first BOSC (Bioinformatics Open Source Conference) was held in 2000, there were already a number of popular open source bioinformatics packages, and the number and range of these projects has increased dramatically since then. covers the wide range of open source bioinformatics software being developed, and encompasses the growing movement of Open Science, with its focus on transparency, reproducibility, and data provenance. We welcome submissions relating to all aspects of bioinformatics and open science software, including new computational methods, reusable software components, visualization, interoperability, and other approaches that help to advance research in the biomolecular sciences. Two full days of talks, posters, panel discussions, and informal discussion groups will enable BOSC attendees to interact with other developers and share ideas and code, as well as learning about some of the latest developments in the field of open source bioinformatics. | Open Source software has flourished in the bioinformatics community for well over a decade. When the first BOSC (Bioinformatics Open Source Conference) was held in 2000, there were already a number of popular open source bioinformatics packages, and the number and range of these projects has increased dramatically since then. covers the wide range of open source bioinformatics software being developed, and encompasses the growing movement of Open Science, with its focus on transparency, reproducibility, and data provenance. We welcome submissions relating to all aspects of bioinformatics and open science software, including new computational methods, reusable software components, visualization, interoperability, and other approaches that help to advance research in the biomolecular sciences. Two full days of talks, posters, panel discussions, and informal discussion groups will enable BOSC attendees to interact with other developers and share ideas and code, as well as learning about some of the latest developments in the field of open source bioinformatics. | ||
Please spread the word about BOSC--all are welcome. On Twitter, [https://twitter.com/OBF_BOSC follow @OBF_BOSC] and use [https://twitter.com/search?q=%23BOSC2014 hash tag #bosc2014]. | Please spread the word about BOSC--all are welcome. On Twitter, [https://twitter.com/OBF_BOSC follow @OBF_BOSC] and use [https://twitter.com/search?q=%23BOSC2014 hash tag #bosc2014]. | ||
| + | |||
| + | == Registration == | ||
| + | |||
| + | Because BOSC is run as a two-day Special Interest Group (SIG) meeting at the annual ISMB conference, [https://www.iscb.org/ismb2014-registration registration is via the ISMB 2014]. You can attend just BOSC, or combine this will attending the full ISMB conference as well. | ||
| + | |||
| + | Note that this year we are [http://news.open-bio.org/news/2014/03/free-student-presenters-bosc-2014/ waiving the BOSC registration fee for student presenters]. | ||
== Sponsors == | == Sponsors == | ||
Revision as of 14:22, 2 May 2014
The 15th Annual Bioinformatics Open Source Conference (BOSC 2014) will be held in Boston on July 11-12, right before ISMB 2014 as one of the SIG meetings.
Abstract submission for talks is now closed. However, we will begin accepting poster abstracts in May.
Important Dates
- April 4, 2014: Deadline for submitting talk abstracts
- May 2, 2014: Talk acceptance notices due to be sent out
- May 2, 2014: Call for poster abstracts due to open
- June 6, 2014: Deadline for early booking registration
- June 27, 2014: Deadline for normal registration
- July 9-10, 2014: Codefest 2014, Boston, MA
- July 11-12, 2014: BOSC 2014, Boston, MA
- July 12-16, 2014: ISMB 2014, Boston, MA
Overview
The Bioinformatics Open Source Conference (BOSC) is run as a two-day meeting before the annual ISMB conference. It is sponsored by the Open Bioinformatics Foundation (O|B|F), a non-profit group dedicated to promoting the practice and philosophy of Open Source software development within the biological research community.
Open Source software has flourished in the bioinformatics community for well over a decade. When the first BOSC (Bioinformatics Open Source Conference) was held in 2000, there were already a number of popular open source bioinformatics packages, and the number and range of these projects has increased dramatically since then. covers the wide range of open source bioinformatics software being developed, and encompasses the growing movement of Open Science, with its focus on transparency, reproducibility, and data provenance. We welcome submissions relating to all aspects of bioinformatics and open science software, including new computational methods, reusable software components, visualization, interoperability, and other approaches that help to advance research in the biomolecular sciences. Two full days of talks, posters, panel discussions, and informal discussion groups will enable BOSC attendees to interact with other developers and share ideas and code, as well as learning about some of the latest developments in the field of open source bioinformatics.
Please spread the word about BOSC--all are welcome. On Twitter, follow @OBF_BOSC and use hash tag #bosc2014.
Registration
Because BOSC is run as a two-day Special Interest Group (SIG) meeting at the annual ISMB conference, registration is via the ISMB 2014. You can attend just BOSC, or combine this will attending the full ISMB conference as well.
Note that this year we are waiving the BOSC registration fee for student presenters.
Sponsors
BOSC is organised by the Open Bioinformatics Foundation, a non-profit, volunteer-run group dedicated to promoting the practice and philosophy of Open Source software development and Open Science within the biological research community.
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We thank Eagle Genomics for sponsoring the BOSC Student Travel Awards again this year, and welcome the open access journal GigaScience, and Curoverse (the team behind the open source platform Arvados) as new sponsors for BOSC 2014.
Session Topics
- Open Science and Reproducible Research -- covers the theory and practice of open science, including open notebook science, open data, transparent and reproducible workflows, and shared standards for reviewing and publishing research papers.
- Software Interoperability -- includes Open Source approaches to integrating the latest bioinformatics tools, exploring how we can increase tool connectivity and help communities work better together.
- Genome-scale Data and Beyond -- encompasses software and other tools designed for managing, exploring, and analyzing large-scale data to address research questions, such as genome assembly, variant prediction, eQTL analysis, phylogenomics, and epigenetics.
- Visualization -- focuses on approaches for interactive as well as static visual representations of biomedical data, ranging from exploration to explanation.
- Translational Bioinformatics -- explores applications of biological and medical informatics to the development of personalized healthcare, therapies, and a better understanding of human health and disease. Topics include the analysis of large scale population and family sequencing data, bioinformatics methodologies for clinical research, and tools for discovering clinically useful associations in human databases.
- Bioinformatics Open Source Project Updates -- features short talks from ongoing projects describing their recent progress. Abstracts will be solicited from open source projects affiliated with the O|B|F (see http://www.open-bio.org/wiki/Projects), including the Bio* projects, DAS, BioMOBY, EMBOSS, and GMOD, but any other open-source project will be equally eligible to submit abstracts for this session.
- Panel: Reproducibility: Rewards and Challenges
Keynote Speakers
This year's keynote speakers will be C. Titus Brown (Michigan State University) and Philip Bourne (NIH).
More information about BOSC 2014 Keynote Speakers
Submitting Abstracts
The deadline for submitting abstracts to be considered for talks was Friday, April 4, 2014. We will reopen submission for poster abstracts on May 1.
Organizing Committee
Co-Chairs
- Peter Cock (Biopython developer; James Hutton Institute)
- Nomi L. Harris (Lawrence Berkeley National Laboratory)
Members
- Raoul Jean Pierre Bonnal (Istituto Nazionale Genetica Molecolare (National Institute of Molecular Genetics), Italy)
- Brad Chapman (Biopython developer; Harvard School of Public Health)
- Robert Davey (The Genome Analysis Centre)
- Christopher Fields (National Center for Supercomputing Applications)
- Hans-Rudolf Hotz (Friedrich Miescher Institute for Biomedical Research)
- Hilmar Lapp (National Evolutionary Synthesis Center)
Ex Officio (Members of the O|B|F Board)
Previous BOSCs
- BOSC has been held yearly since 2000.
- BOSC 2013 took place in Berlin, Germany, in July 2013. See Harris et al. (2013) The Bioinformatics Open Source Conference (BOSC) 2013. PeerJ PrePrints 1:e83v1
- Information about the first 14 BOSC conferences
Contact Us
- Follow BOSC on Twitter: @OBF_BOSC, #bosc2014
- If you'd like to join the mailing list for BOSC-related announcements, including the call for abstracts and deadline reminders, please subscribe to the Bosc-announce list. This list has low traffic, and your address will be kept private.
- If you have questions about the conference, or would like to volunteer to help out, please contact the organizers at bosc@open-bio.org.
