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Difference between revisions of "BOSC 2010 Schedule"
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* Sebastian J. Schultheiss: [[Media:5_BOSC2010.pdf | Long-term availability of bioinformatics web services]] | * Sebastian J. Schultheiss: [[Media:5_BOSC2010.pdf | Long-term availability of bioinformatics web services]] | ||
* Kazuharu Arakawa: [[Media:6_BOSC2010.pdf | G-language Bookmarklet: a gateway for Semantic Web, Linked Data, and Web Services]] | * Kazuharu Arakawa: [[Media:6_BOSC2010.pdf | G-language Bookmarklet: a gateway for Semantic Web, Linked Data, and Web Services]] | ||
| − | * [[Media:21_BOSC2010.pdf | ONTO-ToolKit: enabling bio-ontology engineering via Galaxy]] | + | * Aravind Venkatesan: [[Media:21_BOSC2010.pdf | ONTO-ToolKit: enabling bio-ontology engineering via Galaxy]] |
* [[Media:25_BOSC2010.pdf | Connecting TOPSAN to Computational Analysis]] | * [[Media:25_BOSC2010.pdf | Connecting TOPSAN to Computational Analysis]] | ||
* [[Media:20_BOSC2010.pdf | Musite: Global Prediction of General and Kinase-Specific Phosphorylation Sites]] | * [[Media:20_BOSC2010.pdf | Musite: Global Prediction of General and Kinase-Specific Phosphorylation Sites]] | ||
Revision as of 00:30, 20 May 2010
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Contents
Keynote Speakers
Guy Coates
Guy Coates, Group leader of the Informatics Systems Group at the Wellome Trust Sanger Institute, will be one of our keynote speakers at BOSC 2010. Guy Coates is an expert in large Linux/Unix systems architecture, management and application optimization, next-gen DNA sequencing pipelines, very large database systems (>50TB), and high performance compute clusters (1500+ CPUs). He will lead off the conference, with a talk entitled:
Clouds: all fluff and no substance? Cloud architectures have made plenty of impact in the press over the past 18 months, but have they made any impact in solving real bioinformatics challenges? This talk will detail the Sanger Institute's experiences with the cloud, both good and bad, and ask what needs to be done to prepare the cloud for the era of commodity sequencing and $500 genomes.
Ross Gardler
Our other keynote speaker will be Ross Gardler, Vice President for Community Development at the Apache Software Foundation and Manager for OSS Watch (University of Oxford), which helps institutions and projects in the UK that are using or developing free and open source software. He has also performed Computer Science and Management research and teaching in both the UK and West Indies. In his talk, he will share with the O|B|F community the insights he has gained in community building for Apache and other open source projects.
List of confirmed speakers from submitted abstracts
This list is in no particular order, the exact schedule of talks will be forthcoming.
Click on the talk title to view the abstract as a PDF file.
- Christopher Fields and Mark Jensen: Towards a Modern BioPerl: BioPerl Update 2010
- Raoul J.P. Bonnal: BioRuby 2010 updates: moving to agile bioinformatics
- Peter Rice: EMBOSS: The European Molecular Biology Open Software Suite
- Peter Cock/Brad Chapman: Biopython Project Update
- Laurent Gautier: Bioconductor with Python, What else ?
- Tiago Antao: interPopula: Database and tool integration for population genetics using Python
- Eric W Talevich: Bio.Phylo: A unified phylogenetics toolkit for Biopython
- Ronald Taylor: An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics
- M. Hanna: The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
- Judy Qiu: Hybrid Cloud and Cluster Computing Paradigms for Life Science Applications
- S. Möller: Community-driven computational biology with Debian and Taverna
- Brian D. O'Connor: SeqWare Query Engine: Storing and Searching Sequence Data in the Cloud
- Darin London: Dealing with the Data Deluge: What can the Robotics Community Teach us?
- Mark Wilkinson: From Moby to SADI - Modeling Semantic Web Services with the Semantic Automated Discovery and Integration Framework
- Sebastian J. Schultheiss: Long-term availability of bioinformatics web services
- Kazuharu Arakawa: G-language Bookmarklet: a gateway for Semantic Web, Linked Data, and Web Services
- Aravind Venkatesan: ONTO-ToolKit: enabling bio-ontology engineering via Galaxy
- Connecting TOPSAN to Computational Analysis
- Musite: Global Prediction of General and Kinase-Specific Phosphorylation Sites
- Building Bioinformatics Web Application with Clickframes
- MOLGENIS: rapid prototyping of biosoftware at the push of a button
- Generating a data platform for microarray gene expression experiments using MOLGENIS and MAGE-TAB
- BioHDF: Open binary file formats for NGS data - current status and future directions
- Automated Annotation of NGS Transcriptome Data using ISGA and Ergatis
- Cytoscape Web: An interactive, customizable web-based network browser
- Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API
- GBrowse2
- Fiji Is Just ImageJ - an Open Source platform for biological image analysis
- IPRStats: visualization and analysis of InterProScan Results
- The Microsoft Biology Foundation
- Concurrent Bioinformatics Software for Discovering Genome-wide Patterns and Word-based Genomic Signatures
