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Difference between revisions of "Bio-packaging"

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(Created page with "If you are in any way interested in software packaging and deployment for bioinformatics you can meet like-minded people on the Open Bioinformatics Foundation (OBF) bio-packag...")
 
(List of packaging systems)
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Here we discuss issues around packaging and deploying software: anything that concerns dependencies, multiple version support and/or reproducibility. The general idea is to come up with solutions we can share across environments and construct (shared) pipelines out of them.
 
Here we discuss issues around packaging and deploying software: anything that concerns dependencies, multiple version support and/or reproducibility. The general idea is to come up with solutions we can share across environments and construct (shared) pipelines out of them.
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== Generic packaging systems ==
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=== GNU Guix ===
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== Language based packaging systems ==
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=== Ruby biogems ===
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=== Python packages ===
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=== Perl CPAN ===
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== Linux distributions and VMs ==
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=== Debian BioMed ===
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=== CloudBiolinux ===
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=== Galaxy ===
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=== Docker ===

Revision as of 19:25, 28 May 2015

If you are in any way interested in software packaging and deployment for bioinformatics you can meet like-minded people on the Open Bioinformatics Foundation (OBF) bio-packaging mailing list at

   http://lists.open-bio.org/mailman/listinfo/bio-packaging

Here we discuss issues around packaging and deploying software: anything that concerns dependencies, multiple version support and/or reproducibility. The general idea is to come up with solutions we can share across environments and construct (shared) pipelines out of them.

Generic packaging systems

GNU Guix

Language based packaging systems

Ruby biogems

Python packages

Perl CPAN

Linux distributions and VMs

Debian BioMed

CloudBiolinux

Galaxy

Docker