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Difference between revisions of "BOSC 2012 Schedule"

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== Day 1: Friday,  July 13 ==
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[[File:Pear.png‎|100px|right|BOSC logo|link=BOSC_2012]]
  
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{| border="1" cellspacing="0" cellpadding="6"
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'''[[Media:BOSC2012_schedule.pdf | Click here to download this schedule as PDF]]'''
 +
 
 +
'''[http://www.open-bio.org/bosc2012/BOSC2012-program.pdf Complete program as PDF]'''
 +
 
 +
= Day 1: Friday,  July 13 =
 +
 
 +
{| border="1" cellspacing="0" cellpadding="7"
 
! Time
 
! Time
 
! Topic
 
! Topic
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|-
 
|-
 
| 9:15-10:15
 
| 9:15-10:15
−
| [Keynote] Science Wants to Be Open - If Only We Could Get Out of Its Way
+
| [Keynote] Science Wants to Be Open - If Only We Could Get Out of Its Way ** [http://www.youtube.com/watch?v=oWZzUe3Kxeo Talk] **
 
| Jonathan Eisen (University of California, Davis)
 
| Jonathan Eisen (University of California, Davis)
 
|-
 
|-
Line 24: Line 30:
 
| 10:45-12:30
 
| 10:45-12:30
 
| Session: Cloud and Parallel Computing
 
| Session: Cloud and Parallel Computing
−
| Chair:  
+
| Chair: Richard Holland
 
|-
 
|-
−
|| 25
+
|| 10:45
−
| [Cloud] Cloudgene - an execution platform for MapReduce programs in public and private clouds
+
| [Cloud] [http://www.slideshare.net/jandot/l-forer-cloudgene-an-execution-platform-for-mapreduce-programs-in-public-and-private-clouds Cloudgene - an execution platform for MapReduce programs in public and private clouds]
−
| Sebastian Schoenherr
+
| Sebastian Schönherr
 
|-
 
|-
−
| 25
+
| 11:10
−
| [Cloud] Data reduction and division approaches for assembling short-read data in the cloud
+
| [Cloud] [http://www.slideshare.net/jandot/ct-brown-doing-nextgen-sequencing-analysis-in-the-cloud Data reduction and division approaches for assembling short-read data in the cloud]
 
| C. Titus Brown
 
| C. Titus Brown
 
|-
 
|-
−
| 25
+
| 11:35
−
| [Cloud] MGTAXA - a toolkit and a Web server for predicting taxonomy of the metagenomic sequences with Galaxy front-end and parallel computational back-end
+
| [Cloud] [http://www.slideshare.net/jandot/a-tovchigrechko-mgtaxa-a-toolkit-and-webserver-for-predicting-taxonomy-of-the-metagenomic-sequences MGTAXA - a toolkit and a Web server for predicting taxonomy of the metagenomic sequences with Galaxy front-end and parallel computational back-end]
 
| Andrey Tovchigrechko
 
| Andrey Tovchigrechko
 
|-
 
|-
−
| 15
+
| 12:00
−
| [Cloud] Workflows on the Cloud - Scaling for National Service
+
| [Cloud] [http://www.slideshare.net/jandot/wolstencroft-k-workflows-on-the-cloud-scaling-for-national-service Workflows on the Cloud - Scaling for National Service]
−
| Shoaib Sufi
+
| Katy Wolstencroft
 
|-
 
|-
−
| 15
+
| 12:15
−
| [Cloud] How to use BioJava to calculate one billion protein structure alignments at the RCSB PDB website
+
| [Cloud] [http://www.slideshare.net/jandot/a-prlic-biojava-update How to use BioJava to calculate one billion protein structure alignments at the RCSB PDB website]
 
| Andreas Prlic
 
| Andreas Prlic
 
|-
 
|-
Line 51: Line 57:
 
|-
 
|-
 
| 12:30-2:00
 
| 12:30-2:00
−
| '''Poster Session I''' (Room TBA)
+
| '''Poster Session I'''
 
|
 
|
 
|-
 
|-
 
| 2:00-3:30
 
| 2:00-3:30
 
| Session: Genome-scale Data Management
 
| Session: Genome-scale Data Management
−
| Chair:  
+
| Chair: Ronald Taylor
 
|-
 
|-
−
| 15
+
| 2:00
−
| [Genome-scale] Using HDF5 to Work With Large Quantities of Biological Data
+
| [Genome-scale] [http://www.slideshare.net/jandot/d-robinson-using-hdf5-to-work-with-large-quantities-of-rich-biological-data Using HDF5 to Work With Large Quantities of Biological Data]
 
| Dana Robinson
 
| Dana Robinson
 
|-
 
|-
−
| 15
+
| 2:15
−
| [Genome-scale] Large scale data management in Chipster 2 workflow environment
+
| [Genome-scale] [http://www.slideshare.net/jandot/a-kallio-large-scale-data-management-in-chipster-2-workflow-environment Large scale data management in Chipster 2 workflow environment]
 
| Aleksi Kallio
 
| Aleksi Kallio
 
|-
 
|-
−
| 15
+
| 2:30
 
| [Genome-scale] JBrowse 2012
 
| [Genome-scale] JBrowse 2012
−
| Ian Holmes
+
| (Ian Holmes is sick--instead we will see a short talk on JBrowse by Robert Buels)
 
|-
 
|-
−
| 15
+
| 2:38
−
| [Genome-scale] Khmer: A probabilistic approach for efficient counting of k-mers  
+
| [http://www.slideshare.net/jandot/b-chapman-codefest-bosc2012 Report] on [http://www.open-bio.org/wiki/Codefest_2012 Codefest 2012]
 +
| Brad Chapman
 +
|-
 +
| 2:45
 +
| [Genome-scale] [http://www.slideshare.net/jandot/zhang-q-a-probabilistic-approach-to-kmer-counting Khmer: A probabilistic approach for efficient counting of k-mers]
 
| Qingpeng Zhang
 
| Qingpeng Zhang
 
|-
 
|-
−
| 15
+
| 3:00
−
| [Genome-scale] AmiGO 2: a document-oriented approach to ontology software and escaping the heartache of an SQL backend
+
| [Genome-scale] [http://www.slideshare.net/jandot/s-carbon AmiGO 2: a document-oriented approach to ontology software and escaping the heartache of an SQL backend]
 
| Seth Carbon
 
| Seth Carbon
 
|-
 
|-
−
| 15
+
| 3:15
−
| [Genome-scale] Discovery of motif-based regulatory signatures in whole genome methylation experiments
+
| [Genome-scale] [http://www.slideshare.net/jandot/j-lichtenberg-discovery-of-motifbased-regulatory-signatures-in-nextgen-sequencing-experiments Discovery of motif-based regulatory signatures in whole genome methylation experiments]
 
| Jens Lichtenberg
 
| Jens Lichtenberg
 
|-
 
|-
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| Chair: Jan Aerts
 
| Chair: Jan Aerts
 
|-
 
|-
−
|| 25
+
|| 4:00
−
| [Linked / Translational] The open source ISA metadata tracking framework: from data curation and management at the source, to the linked data universe
+
| [Linked / Translational] [http://www.slideshare.net/jandot/p-roccaserra-the-open-source-isa-metadata-tracking-framework-from-data-curation-and-management-at-the-source-to-the-linked-data-universe The open source ISA metadata tracking framework: from data curation and management at the source, to the linked data universe]
 
| Philippe Rocca-Serra
 
| Philippe Rocca-Serra
 
|-
 
|-
−
| 25
+
| 4:25
−
| [Linked / Translational] Automated infrastructure for custom variant comparison and analysis
+
| [Linked / Translational] [http://www.slideshare.net/jandot/b-chapman-toolkit-for-variation-comparison-and-analysis Automated infrastructure for custom variant comparison and analysis]
 
| Brad Chapman
 
| Brad Chapman
 
|-
 
|-
−
| 15
+
| 4:50
−
| [Linked / Translational] KUPKB: Sharing, Connecting and Exposing Kidney and Urinary Knowledge using RDF and OWL  
+
| [Linked / Translational] [http://www.slideshare.net/jandot/j-klein-kupkb-sharing-connecting-and-exposing-kidney-and-urinary-knowledge-using-rdf-and-owl KUPKB: Sharing, Connecting and Exposing Kidney and Urinary Knowledge using RDF and OWL]
 
| Julie Klein
 
| Julie Klein
 
|-
 
|-
−
| 15
+
| 5:05
−
| [Linked / Translational] eagle-i: development and expansion of a scientific resource discovery network  
+
| [Linked / Translational] [http://www.slideshare.net/jandot/s-cheng-eaglei-development-and-expansion-of-a-scientific-resource-discovery-network eagle-i: development and expansion of a scientific resource discovery network]
 
| Sophia Cheng  
 
| Sophia Cheng  
 
|-
 
|-
−
| 5:20-5:30
+
| 5:20
−
| Report on [http://www.open-bio.org/wiki/Codefest_2012 Codefest 2012]
+
| Introduction to the [http://www.open-bio.org/wiki/Main_Page Open Bioinformatics Foundation]
−
| Brad Chapman
+
| Hilmar Lapp (President, Open Bioinformatics Foundation)
 
|-
 
|-
−
| 5:30-5:40
+
| 5:30
−
| Introduction to the Open Bioinformatics Foundation
+
| Announcements
−
| Hilmar Lapp (President, Open Bioinformatics Foundation)
+
| Nomi Harris (Chair, BOSC 2012)
 
|-
 
|-
−
| 5:40-6:30 '''Poster Session II''' (Room TBA)
+
| 5:30-6:30
 +
|'''Poster Session II''' (Hall B)--there are still spots open for last-minute posters!
 
|
 
|
 
|-
 
|-
−
| 5:40-6:30
+
| 5:30-6:30
 
| [[BOSC_2012/BOFs|BOFs]]
 
| [[BOSC_2012/BOFs|BOFs]]
 
|
 
|
 
|-
 
|-
 
| 7:00
 
| 7:00
−
| Pay-your-own-way optional dinner (place TBA)
+
| Pay-your-own-way BOSC dinner ($25/person): George’s Greek Café, [http://maps.google.com/maps?q=George%27s+Greek+Cafe,+135+Pine+Avenue,+Long+Beach,+CA&hl=en&ll=33.767892,-118.188&spn=0.005699,0.011362&sll=37.887965,-122.267949&sspn=0.016173,0.027766&hq=George%27s+Greek+Cafe,&hnear=135+Pine+Ave,+Long+Beach,+California+90802&t=m&z=17 135 Pine Avenue, Long Beach]. (Registration for dinner is now closed.)
 
|
 
|
 
|-  
 
|-  
 
|}
 
|}
  
−
== Day 2: Saturday, July 14 (Room TBA) ==
+
<br>
 +
[[File:Pear.png‎|100px|right|BOSC logo|link=BOSC_2012]]
  
−
{| border="1" cellspacing="0" cellpadding="10"
+
= Day 2: Saturday, July 14 =
 +
 
 +
{| border="1" cellspacing="0" cellpadding="7"
 
! Time
 
! Time
 
! Topic
 
! Topic
Line 139: Line 153:
 
|-
 
|-
 
| 8:50-9:50
 
| 8:50-9:50
−
| [Keynote] Title TBA
+
| [Keynote] [http://www.slideshare.net/carolegoble/bosc2012-goble If I Build It Will They Come?]
 
| Carole Goble (University of Manchester)
 
| Carole Goble (University of Manchester)
 +
|-
 +
| 9:50-10:15
 +
| [Misc.] [http://www.slideshare.net/jandot/holland-r-pistoia-alliance-sequence-squeeze Pistoia Alliance Sequence Squeeze: Using a competition model to spur development of novel open-source algorithms]
 +
| Richard Holland
 
|-
 
|-
 
| '''10:15-10:45'''
 
| '''10:15-10:45'''
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| 10:45-12:30
 
| 10:45-12:30
 
| Session: Software Interoperability
 
| Session: Software Interoperability
−
| Chair:  
+
| Chair: Hilmar Lapp
 
|-
 
|-
−
| 15
+
| 10:45-11:00
−
| [Interoperability] Take-aways from the Interoperability SIG ([http://www.broadinstitute.org/software/bsi-sig/ BSI-SIG])
+
| [Interoperability] [http://www.slideshare.net/jandot/m-reich-genomespace GenomeSpace: An open source environment for frictionless bioinformatics]
−
| Michael Reich (Co-Chair, BSI-SIG)
+
| Michael Reich
 
|-
 
|-
−
| 15
+
| 11:00-11:15
−
| [Interoperability] Galaxy Project Update
+
| [Interoperability] [http://www.slideshare.net/jandot/d-baker-galaxy-update Galaxy Project Update]
 
| Dannon Baker
 
| Dannon Baker
 
|-
 
|-
−
| 15
+
| 11:15-11:30
−
| [Interoperability] Zero to a Bioinformatics Analysis Platform in 4 Minutes
+
| [Interoperability] [http://www.slideshare.net/jandot/e-afgan-zero-to-a-bioinformatics-analysis-platform-in-four-minutes Zero to a Bioinformatics Analysis Platform in 4 Minutes]
 
| Enis Afgan
 
| Enis Afgan
 
|-
 
|-
−
| 25
+
| 11:30-11:55
−
| [Interoperability] PyPedia: A python crowdsourcing development environment for bioinformatics and computational biology      
+
| [Interoperability] [http://www.slideshare.net/jandot/a-kanterakis-pypedia-a-python-crowdsourcing-development-environment-for-bioinformatics-and-computational-biology PyPedia: A python crowdsourcing development environment for bioinformatics and computational biology]
 
| Alexandros Kanterakis
 
| Alexandros Kanterakis
 
|-
 
|-
−
| 15
+
| 11:55-12:10
−
| [Interoperability] InterMine - Embeddable Data-Mining Components
+
| [Interoperability] [http://www.slideshare.net/jandot/a-kalderimis-intermine-embeddable-datamining-components InterMine - Embeddable Data-Mining Components]
 
| Alexis Kalderimis
 
| Alexis Kalderimis
 
|-
 
|-
−
| 15
+
| 12:10-12:25
−
| [Interoperability] Creating biology pipelines with BioUno
+
| [Interoperability] [http://slidesha.re/MHApSM Creating biology pipelines with BioUno]
 
| Bruno Kinoshi ta
 
| Bruno Kinoshi ta
−
|-
 
−
| 15
 
−
| [Interoperability] A Framework for Interactive Visual Analysis of NGS Data using Galaxy
 
−
| Jeremy Goecks
 
 
|-
 
|-
 
| '''12:30-1:30'''
 
| '''12:30-1:30'''
Line 183: Line 197:
 
|-
 
|-
 
| 12:30-1:45
 
| 12:30-1:45
−
| '''Poster Session III''' (Room TBA)
+
| '''Poster Session III'''
 
|
 
|
 
|-
 
|-
 
| 1:45-3:30
 
| 1:45-3:30
 
| Session: Bioinformatics Open Source Project Updates
 
| Session: Bioinformatics Open Source Project Updates
−
| Chair:  
+
| Chair: Jeremy Goecks
 
|-
 
|-
−
| 15
+
| 1:45-2:00
−
| [Project Updates] Mobyle Web Framework: New Features
+
| [Project Updates] [http://www.slideshare.net/jandot/menager-h-mobyle-web-framework-new-features Mobyle Web Framework: New Features]
 
| Hervé Ménager
 
| Hervé Ménager
 
|-
 
|-
−
| 15
+
| 2:00-2:15
−
| [Project Updates] Biopython Project Update
+
| [Project Updates] [http://www.slideshare.net/jandot/e-talevich-biopython-projectupdate Biopython Project Update 2012]
 
| Eric Talevich
 
| Eric Talevich
 
|-
 
|-
−
| 25
+
| 2:15-2:40
−
| [Project Updates] Biogem,Ruby UCSC API, and BioRuby
+
| [Project Updates] [http://www.slideshare.net/jandot/h-mishima-biogem-ruby-ucsc-api-and-bioruby Biogem,Ruby UCSC API, and BioRuby]
 
| Hiroyuki Mishima
 
| Hiroyuki Mishima
 
|-
 
|-
−
| 15
+
| 2:40-2:55
−
| [Project Updates] scabio - a framework for bioinformatics algorithms in Scala
+
| [Project Updates] [http://www.slideshare.net/jandot/j-goecks-the-galaxy-visual-analysis-framework A Framework for Interactive Visual Analysis of NGS Data using Galaxy]
−
| Markus Gumbel
+
| Jeremy Goecks
 
|-
 
|-
−
|25
+
| 2:55-3:10
−
| [Project Updates] Why Scientists Should Contribute to Wikipedia
+
| [Project Updates] [http://www.slideshare.net/jandot/s-bliven-why-scientists-should-contribute-to-wikipedia Why Scientists Should Contribute to Wikipedia]
 
| Spencer Bliven
 
| Spencer Bliven
 +
|-
 +
| 3:10-3:25
 +
| [Project Updates] [http://www.slideshare.net/jandot/m-gumbel-scabio-a-framework-for-bioinformatics-algorithms-in-scala scabio - a framework for bioinformatics algorithms in Scala]
 +
| Markus Gumbel
 
|-
 
|-
 
| '''3:30-4:00'''
 
| '''3:30-4:00'''
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| Session: Lightning Talks
 
| Session: Lightning Talks
 
| Chair: Kam Dahlquist
 
| Chair: Kam Dahlquist
 +
|-
 +
| 4:00-4:07
 +
| [Lightning] [http://www.slideshare.net/jandot/j-wang-biokepler-a-comprehensive-bioinformatics-scientific-workflow-module-for-distributed-analysis-of-largescale-biological-data bioKepler: A Comprehensive Bioinformatics Scientific Workflow Module for Distributed Analysis of Large-Scale Biological Data]
 +
| Jianwu Wang
 +
|-
 +
| 4:07-4:14
 +
| [Lightning] [http://www.slideshare.net/jandot/l-fu-dao-a-novel-programming-language-for-bioinformatics Dao: a novel programming language for bioinformatics]
 +
| Limin Fu
 +
|-
 +
| 4:14-4:21
 +
| [Lightning] [http://www.slideshare.net/jandot/s-cain-gmod-in-the-cloud-13656789 GMOD in the Cloud]
 +
| Scott Cain
 +
|-
 +
| 4:21-4:28
 +
| [Lightning] [http://www.slideshare.net/jandot/b-temperton-the-bioinformatics-testing-consortium Bioinformatics Testing Consortium: Codebase peer-review to improve robustness of bioinformatic pipelines]
 +
| Ben Temperton
 
|-
 
|-
 
| 4:30-5:30
 
| 4:30-5:30
 
| '''Panel''': Bioinformatics Paper Reviews: Openness of Standards and Standards of Openness
 
| '''Panel''': Bioinformatics Paper Reviews: Openness of Standards and Standards of Openness
 
| Moderator: Brad Chapman
 
| Moderator: Brad Chapman
−
Panelists: C. Titus Brown,  Hilmar Lapp, Scott Markel, Ben Temperton
+
Panelists: C. Titus Brown,  Iain Hrynaszkiewicz, Hilmar Lapp, Scott Markel, Ben Temperton
 
|-
 
|-
 
| 5:30-5:40
 
| 5:30-5:40
Line 227: Line 261:
 
| Nomi Harris
 
| Nomi Harris
 
|-
 
|-
−
| 5:40-6:30
+
| 5:40-6:40
 
| [[BOSC_2012/BOFs|BOFs]]
 
| [[BOSC_2012/BOFs|BOFs]]
 
|
 
|
 
|-
 
|-
 
|}
 
|}
 +
 +
 +
'''[[Media:BOSC2012_schedule.pdf | Click here to download this schedule as PDF]]'''
 +
 +
'''[http://www.open-bio.org/bosc2012/BOSC2012-program.pdf Click here to download the complete BOSC program as PDF]'''
 +
 +
----
  
 
== Return to '''[[BOSC_2012 | BOSC 2012]]''' main page ==
 
== Return to '''[[BOSC_2012 | BOSC 2012]]''' main page ==

Latest revision as of 20:17, 10 September 2013

BOSC logo

Click here to download this schedule as PDF

Complete program as PDF

Day 1: Friday, July 13

Time Topic Speaker or Moderator
7:30-9:00 Registration (Early arrival is recommended as there are usually long lines) Registration
9:00-9:15 Introduction and welcome Nomi Harris (Chair, BOSC 2012)
9:15-10:15 [Keynote] Science Wants to Be Open - If Only We Could Get Out of Its Way ** Talk ** Jonathan Eisen (University of California, Davis)
10:15-10:45 Coffee Break
10:45-12:30 Session: Cloud and Parallel Computing Chair: Richard Holland
10:45 [Cloud] Cloudgene - an execution platform for MapReduce programs in public and private clouds Sebastian Schönherr
11:10 [Cloud] Data reduction and division approaches for assembling short-read data in the cloud C. Titus Brown
11:35 [Cloud] MGTAXA - a toolkit and a Web server for predicting taxonomy of the metagenomic sequences with Galaxy front-end and parallel computational back-end Andrey Tovchigrechko
12:00 [Cloud] Workflows on the Cloud - Scaling for National Service Katy Wolstencroft
12:15 [Cloud] How to use BioJava to calculate one billion protein structure alignments at the RCSB PDB website Andreas Prlic
12:30-1:30 Lunch
12:30-2:00 Poster Session I
2:00-3:30 Session: Genome-scale Data Management Chair: Ronald Taylor
2:00 [Genome-scale] Using HDF5 to Work With Large Quantities of Biological Data Dana Robinson
2:15 [Genome-scale] Large scale data management in Chipster 2 workflow environment Aleksi Kallio
2:30 [Genome-scale] JBrowse 2012 (Ian Holmes is sick--instead we will see a short talk on JBrowse by Robert Buels)
2:38 Report on Codefest 2012 Brad Chapman
2:45 [Genome-scale] Khmer: A probabilistic approach for efficient counting of k-mers Qingpeng Zhang
3:00 [Genome-scale] AmiGO 2: a document-oriented approach to ontology software and escaping the heartache of an SQL backend Seth Carbon
3:15 [Genome-scale] Discovery of motif-based regulatory signatures in whole genome methylation experiments Jens Lichtenberg
3:30-4:00 Coffee Break
4:00-5:20 Session: Linked Data and Translational Knowledge Discovery Chair: Jan Aerts
4:00 [Linked / Translational] The open source ISA metadata tracking framework: from data curation and management at the source, to the linked data universe Philippe Rocca-Serra
4:25 [Linked / Translational] Automated infrastructure for custom variant comparison and analysis Brad Chapman
4:50 [Linked / Translational] KUPKB: Sharing, Connecting and Exposing Kidney and Urinary Knowledge using RDF and OWL Julie Klein
5:05 [Linked / Translational] eagle-i: development and expansion of a scientific resource discovery network Sophia Cheng
5:20 Introduction to the Open Bioinformatics Foundation Hilmar Lapp (President, Open Bioinformatics Foundation)
5:30 Announcements Nomi Harris (Chair, BOSC 2012)
5:30-6:30 Poster Session II (Hall B)--there are still spots open for last-minute posters!
5:30-6:30 BOFs
7:00 Pay-your-own-way BOSC dinner ($25/person): George’s Greek Café, 135 Pine Avenue, Long Beach. (Registration for dinner is now closed.)


BOSC logo

Day 2: Saturday, July 14

Time Topic Speaker or Moderator
8:45-8:50 Announcements Nomi Harris
8:50-9:50 [Keynote] If I Build It Will They Come? Carole Goble (University of Manchester)
9:50-10:15 [Misc.] Pistoia Alliance Sequence Squeeze: Using a competition model to spur development of novel open-source algorithms Richard Holland
10:15-10:45 Coffee Break
10:45-12:30 Session: Software Interoperability Chair: Hilmar Lapp
10:45-11:00 [Interoperability] GenomeSpace: An open source environment for frictionless bioinformatics Michael Reich
11:00-11:15 [Interoperability] Galaxy Project Update Dannon Baker
11:15-11:30 [Interoperability] Zero to a Bioinformatics Analysis Platform in 4 Minutes Enis Afgan
11:30-11:55 [Interoperability] PyPedia: A python crowdsourcing development environment for bioinformatics and computational biology Alexandros Kanterakis
11:55-12:10 [Interoperability] InterMine - Embeddable Data-Mining Components Alexis Kalderimis
12:10-12:25 [Interoperability] Creating biology pipelines with BioUno Bruno Kinoshi ta
12:30-1:30 Lunch
12:30-1:45 Poster Session III
1:45-3:30 Session: Bioinformatics Open Source Project Updates Chair: Jeremy Goecks
1:45-2:00 [Project Updates] Mobyle Web Framework: New Features Hervé Ménager
2:00-2:15 [Project Updates] Biopython Project Update 2012 Eric Talevich
2:15-2:40 [Project Updates] Biogem,Ruby UCSC API, and BioRuby Hiroyuki Mishima
2:40-2:55 [Project Updates] A Framework for Interactive Visual Analysis of NGS Data using Galaxy Jeremy Goecks
2:55-3:10 [Project Updates] Why Scientists Should Contribute to Wikipedia Spencer Bliven
3:10-3:25 [Project Updates] scabio - a framework for bioinformatics algorithms in Scala Markus Gumbel
3:30-4:00 Coffee Break
4:00-4:30 Session: Lightning Talks Chair: Kam Dahlquist
4:00-4:07 [Lightning] bioKepler: A Comprehensive Bioinformatics Scientific Workflow Module for Distributed Analysis of Large-Scale Biological Data Jianwu Wang
4:07-4:14 [Lightning] Dao: a novel programming language for bioinformatics Limin Fu
4:14-4:21 [Lightning] GMOD in the Cloud Scott Cain
4:21-4:28 [Lightning] Bioinformatics Testing Consortium: Codebase peer-review to improve robustness of bioinformatic pipelines Ben Temperton
4:30-5:30 Panel: Bioinformatics Paper Reviews: Openness of Standards and Standards of Openness Moderator: Brad Chapman

Panelists: C. Titus Brown, Iain Hrynaszkiewicz, Hilmar Lapp, Scott Markel, Ben Temperton

5:30-5:40 Presentation of awards Nomi Harris
5:40-6:40 BOFs


Click here to download this schedule as PDF

Click here to download the complete BOSC program as PDF

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